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132 ref.fa 81359 G/A 0.388158 59 0 93 0 ref.fa 81407 A/G 0.0144928 136 0 2 0 ref.fa 81469 C/T 0.178344 0 129 0 28 ref.fa 81535 A/T 0.228916 128 0 0 38 ref.fa 81543 T/C 0.0217391 0 3 0 135 ref.fa 81664 T/G 0.0133333 0 0 2 148 ref.fa 81809 T/C 0.0807453 0 13 0 148 ref.fa 81825 G/A 0.041958 6 0 137 0 ref.fa 81892 G/A 0.0434783 7 0 154 0 ref.fa 81917 A/G 0.393701 77 0 50 0 ref.fa 81954 T/G 0.233333 0 0 35 115 ref.fa 81978 A/T 0.134328 116 0 0 18 ref.fa 82000 C/A 0.325926 44 91 0 0 ref.fa 82096 T/C 0.246032 0 31 0 95 ref.fa 82195 A/C 0.0277778 140 4 0 0 ref.fa 82198 A/C 0.020979 140 3 0 0 ref.fa 82202 A/C 0.286822 92 37 0 5 ref.fa 82209 T/C 0.0486111 0 7 0 137 ref.fa 82236 G/T 0.114286 0 0 124 16 ref.fa 82263 T/A 0.0595238 10 0 0 158 ref.fa 82283 A/G 0.0136054 145 0 2 0 ref.fa 82332 A/C 0.0952381 133 14 0 0 ref.fa 82365 A/T 0.0344828 140 0 0 5 ref.fa 82382 G/C 0.0915493 0 13 129 0 ref.fa 82385 T/A 0.4 54 0 0 81 ref.fa 82438 C/A 0.360248 58 103 0 0 ref.fa 82453 G/A 0.100629 16 0 143 0 ref.fa 82466 T/C 0.0392157 0 6 0 147 ref.fa 82561 T/C 0.454545 0 70 0 84 ref.fa 82578 C/G 0.233696 0 141 43 0 ref.fa 82624 G/A 0.342466 50 0 96 0 ref.fa 82721 T/A 0.407895 62 0 0 90 ref.fa 82730 G/A 0.0314465 5 0 154 0 ref.fa 82741 C/G 0.0193548 0 152 3 0 ref.fa 82772 G/C 0.438356 0 64 82 0 ref.fa 82819 G/C 0.396947 0 52 79 0 ref.fa 82837 T/A 0.389313 51 0 0 80 ref.fa 82862 C/T 0.0347222 0 139 0 5 ref.fa 82895 G/C 0.374194 0 58 97 0 ref.fa 82968 G/C 0.062069 0 9 136 0 ref.fa 83012 T/C 0.0326797 0 5 0 148 ref.fa 83013 G/T 0.0816327 0 0 135 12 ref.fa 83089 T/A 0.436242 65 0 0 84 ref.fa 83119 G/C 0.104938 0 17 145 0 ref.fa 83134 T/G 0.146853 0 0 21 122 ref.fa 83194 G/C 0.45614 0 52 62 0 ref.fa 83196 G/T 0.440678 0 0 66 52 ref.fa 83202 C/A 0.268293 33 90 0 0 ref.fa 83245 G/A 0.0124224 2 0 159 0 ref.fa 83286 T/G 0.48 0 0 60 65 ref.fa 83302 T/G 0.406015 0 0 54 79 ref.fa 83370 C/A 0.108527 14 115 0 0 ref.fa 83400 A/C 0.0466667 143 7 1 0 ref.fa 83452 A/C 0.471831 75 67 0 0 ref.fa 83513 T/G 0.375839 0 0 56 93 ref.fa 83531 C/T 0.0357143 0 135 0 5 ref.fa 83547 C/G 0.446154 0 72 58 0 ref.fa 83551 G/A 0.453237 63 0 76 0 ref.fa 83578 G/A 0.0410959 6 0 140 0 ref.fa 83641 T/C 0.0833333 0 12 0 132 ref.fa 83655 G/C 0.0222222 0 3 132 0 ref.fa 83657 A/G 0.107143 125 0 15 0 ref.fa 83976 C/T 0.0277778 0 140 0 4 ref.fa 84140 G/T 0.0447761 0 0 128 6 ref.fa 84157 A/C 0.0352941 164 6 0 0 ref.fa 84196 T/G 0.411765 0 0 56 80 ref.fa 84387 G/C 0.0616438 0 9 137 0 ref.fa 84420 C/A 0.0416667 7 161 0 0 ref.fa 84599 A/T 0.0136054 145 0 0 2 ref.fa 84659 C/A 0.1875 30 130 0 0 ref.fa 84678 T/A 0.0687023 9 0 0 122 ref.fa 84689 A/G 0.0188679 156 0 3 0 ref.fa 84700 T/A 0.0731707 12 0 0 152 ref.fa 84707 A/T 0.011236 176 0 0 2 ref.fa 84732 C/T 0.107143 0 125 0 15 ref.fa 84811 G/A 0.352113 50 0 92 0 ref.fa 84851 C/A 0.478873 68 74 0 0 ref.fa 84857 T/C 0.165354 0 21 0 106 ref.fa 84878 A/G 0.075188 123 0 10 0 ref.fa 84890 C/T 0.0143885 0 137 0 2 ref.fa 84974 C/A 0.441379 64 81 0 0 ref.fa 85055 C/G 0.0342466 0 141 5 0 ref.fa 85154 G/A 0.124224 20 0 141 0 ref.fa 85186 A/T 0.0597015 126 0 0 8 ref.fa 85282 T/G 0.0292398 0 0 5 166 ref.fa 85305 C/G 0.0208333 0 141 3 0 ref.fa 85386 A/G 0.0275862 141 0 4 0 ref.fa 85454 A/T 0.0196078 150 0 0 3 ref.fa 85472 A/G 0.0189873 155 0 3 0 ref.fa 85575 G/A 0.0620155 8 0 121 0 ref.fa 85626 G/A 0.465278 67 0 77 0 ref.fa 85653 T/C 0.0988372 0 17 0 155 ref.fa 85862 A/T 0.402878 83 0 0 56 ref.fa 86018 A/G 0.0571429 132 0 8 0 ref.fa 86040 A/G 0.0217391 135 0 3 0 ref.fa 86072 T/A 0.368098 60 0 0 103 ref.fa 86148 G/C 0.398601 0 57 86 0 ref.fa 86151 T/A 0.133803 19 0 0 123 ref.fa 86273 A/C 0.327273 111 54 0 0 ref.fa 86326 G/A 0.0591716 10 0 159 0 ref.fa 86354 A/C 0.10625 143 17 0 0 ref.fa 86358 C/A 0.205128 32 124 0 0 ref.fa 86416 T/G 0.230769 0 0 33 110 ref.fa 86513 G/T 0.456 0 0 68 57 ref.fa 86683 G/A 0.147436 23 0 133 0 ref.fa 86790 T/A 0.05625 9 0 0 151 ref.fa 86825 C/A 0.127517 19 130 0 0 ref.fa 86868 G/C 0.0610687 0 8 123 0 ref.fa 87119 G/T 0.49635 0 0 69 68 ref.fa 87275 C/G 0.362963 0 86 49 0 ref.fa 87412 C/A 0.0152672 2 129 0 0 ref.fa 87464 G/A 0.0245399 4 0 159 0 ref.fa 87553 A/G 0.343949 103 0 54 0 ref.fa 87610 G/T 0.463087 0 0 80 69 ref.fa 87620 T/G 0.205298 0 0 31 120 ref.fa 87660 A/G 0.0111111 89 0 1 0 ref.fa 87664 C/T 0.482759 0 45 0 42 ref.fa 87665 A/G 0.494505 46 0 45 0 ref.fa 87742 C/A 0.0650888 11 158 0 0 ref.fa 87788 C/G 0.361702 0 90 51 0 ref.fa 87878 G/C 0.033557 0 5 144 0 ref.fa 87915 C/G 0.0878378 0 135 13 0 ref.fa 87992 C/A 0.0902256 12 121 0 0 ref.fa 87999 T/G 0.016 0 0 2 123 ref.fa 88072 A/G 0.246032 95 0 31 0 ref.fa 88109 G/A 0.0201342 3 0 146 0 ref.fa 88170 G/C 0.0725806 0 9 115 0 ref.fa 88183 T/G 0.408 0 0 51 74 ref.fa 88194 T/A 0.04 6 0 0 144 ref.fa 88214 A/G 0.084507 130 0 12 0 ref.fa 88257 T/C 0.333333 0 50 0 100 ref.fa 88311 T/A 0.496599 73 0 0 74 ref.fa 88342 T/G 0.025641 0 0 4 152 ref.fa 88406 G/A 0.430657 59 0 78 0 ref.fa 88497 A/G 0.270968 113 0 42 0 ref.fa 88512 C/T 0.0212766 0 138 0 3 ref.fa 88593 A/T 0.0185185 159 0 0 3 ref.fa 88610 T/C 0.031746 0 4 0 122 ref.fa 88632 A/T 0.141104 140 0 0 23 ref.fa 88727 G/T 0.369427 0 0 99 58 ref.fa 88750 T/C 0.319149 0 45 0 96 ref.fa 88824 C/T 0.176871 0 121 0 26 ref.fa 88862 A/T 0.436242 84 0 0 65 ref.fa 88919 C/A 0.0277778 4 140 0 0 ref.fa 88968 T/A 0.0588235 10 0 0 160 ref.fa 88973 C/A 0.0529412 9 161 0 0 ref.fa 88988 A/T 0.25625 119 0 0 41 ref.fa 89136 T/A 0.395522 53 0 0 81 ref.fa 89279 C/G 0.376623 0 96 58 0 ref.fa 89292 A/T 0.0180723 163 0 0 3 ref.fa 89391 T/C 0.0124224 0 2 0 159 ref.fa 89522 C/A 0.144928 20 118 0 0 ref.fa 89602 A/C 0.0292398 166 5 0 0 ref.fa 89672 A/G 0.24359 118 0 38 0 ref.fa 89888 T/C 0.444444 0 60 0 75 ref.fa 89889 T/A 0.442857 62 0 0 78 ref.fa 89896 A/C 0.0206897 142 3 0 0 ref.fa 89914 A/T 0.0310078 125 0 0 4 ref.fa 90024 C/A 0.395683 55 84 0 0 ref.fa 90053 G/T 0.382979 0 0 87 54 ref.fa 90056 G/T 0.380282 0 0 88 54 ref.fa 90189 C/T 0.0206897 0 142 0 3 ref.fa 90195 G/C 0.4 0 60 90 0 ref.fa 90247 C/A 0.0684932 10 136 0 0 ref.fa 90327 A/T 0.22695 109 0 0 32 ref.fa 90385 A/C 0.359477 98 55 0 0 ref.fa 90430 G/A 0.0229008 3 0 128 0 ref.fa 90440 G/T 0.0214286 0 0 137 3 ref.fa 90504 G/T 0.037594 0 0 128 5 ref.fa 90625 A/T 0.081761 146 0 0 13 ref.fa 90666 A/T 0.0544218 139 0 0 8 ref.fa 90996 A/C 0.100671 134 15 0 0 ref.fa 91174 C/T 0.0261438 0 149 0 4 ref.fa 91215 T/A 0.0914286 16 0 0 159 ref.fa 91268 G/T 0.0232558 0 0 168 4 ref.fa 91279 A/C 0.0136986 144 2 0 0 ref.fa 91327 G/C 0.0755814 0 13 159 0 ref.fa 91377 T/A 0.0532544 9 0 0 160 ref.fa 91378 G/A 0.0555556 9 0 153 0 ref.fa 91461 G/A 0.244275 32 0 99 0 ref.fa 91486 C/A 0.324841 51 106 0 0 ref.fa 91497 A/T 0.120219 161 0 0 22 ref.fa 91581 A/T 0.320312 87 0 0 41 ref.fa 91609 C/A 0.0448718 7 149 0 0 ref.fa 91666 G/C 0.0289855 0 4 134 0 ref.fa 91687 G/T 0.0542169 0 0 157 9 ref.fa 91733 T/G 0.0481928 0 0 8 158 ref.fa 92014 T/A 0.0135135 2 0 0 146 ref.fa 92089 G/A 0.387324 55 0 87 0 ref.fa 92118 A/G 0.414966 86 0 61 0 ref.fa 92146 G/T 0.0182927 0 0 161 3 ref.fa 92147 G/T 0.0328947 0 0 147 5 ref.fa 92174 G/A 0.0384615 5 0 125 0 ref.fa 92207 G/T 0.0797101 0 0 127 11 ref.fa 92229 A/T 0.0258065 151 0 0 4 ref.fa 92237 A/G 0.391892 90 0 58 0 ref.fa 92389 C/G 0.0955414 0 142 15 0 ref.fa 92539 T/G 0.0291971 0 0 4 133 ref.fa 92572 C/G 0.05625 0 151 9 0 ref.fa 92605 A/T 0.125828 132 0 0 19 ref.fa 92612 A/G 0.261146 116 0 41 0 ref.fa 92653 C/T 0.348684 0 99 0 53 ref.fa 92657 G/C 0.0275862 0 4 141 0 ref.fa 92740 A/G 0.013986 141 0 2 0 ref.fa 92774 C/G 0.348387 0 101 54 0 ref.fa 92790 G/T 0.0285714 0 0 136 4 ref.fa 92840 C/G 0.0128205 0 154 2 0 ref.fa 92851 C/G 0.047619 0 120 6 0 ref.fa 92856 G/A 0.240602 32 0 101 0 ref.fa 92905 G/T 0.0119048 1 0 166 2 ref.fa 93054 C/A 0.125874 18 125 0 0 ref.fa 93140 A/T 0.131944 125 0 0 19 ref.fa 93205 G/C 0.120567 0 17 124 0 ref.fa 93295 G/A 0.0188679 3 0 156 0 ref.fa 93298 C/G 0.266234 0 113 41 0 ref.fa 93383 G/A 0.0234375 3 0 125 0 ref.fa 93393 T/G 0.271429 0 0 38 102 ref.fa 93395 C/G 0.0140845 0 140 2 0 ref.fa 93422 A/T 0.0261438 149 0 0 4 ref.fa 93445 G/C 0.496063 0 63 64 0 ref.fa 93500 A/G 0.0808824 125 0 11 0 ref.fa 93558 T/G 0.0381679 0 0 5 126 ref.fa 93658 G/A 0.450704 64 0 78 0 ref.fa 93700 C/A 0.0208333 3 141 0 0 ref.fa 93813 C/A 0.0211268 3 139 0 0 ref.fa 93848 G/A 0.038961 6 0 148 0 ref.fa 93868 G/A 0.0454545 8 0 168 0 ref.fa 93926 A/T 0.0135135 146 0 0 2 ref.fa 94097 A/C 0.013245 149 2 0 0 ref.fa 94155 A/G 0.0921986 128 0 13 0 ref.fa 94204 T/C 0.0153846 0 2 0 128 ref.fa 94221 A/T 0.0176471 167 0 0 3 ref.fa 94274 T/A 0.0261438 4 0 0 149 ref.fa 94300 G/A 0.0472973 7 0 141 0 ref.fa 94353 T/G 0.341615 0 0 55 106 ref.fa 94387 T/C 0.0133333 0 2 0 148 ref.fa 94388 G/C 0.0186335 0 3 158 0 ref.fa 94459 C/A 0.266234 41 113 0 0 ref.fa 94476 G/T 0.283871 0 0 111 44 ref.fa 94548 A/G 0.129252 128 0 19 0 ref.fa 94554 G/A 0.0448718 7 0 149 0 ref.fa 94560 A/T 0.0124224 159 0 0 2 ref.fa 94621 G/C 0.384615 0 50 80 0 ref.fa 94707 T/A 0.439394 58 0 0 74 ref.fa 94750 G/T 0.0136986 0 0 144 2 ref.fa 94855 A/T 0.0405405 142 0 0 6 ref.fa 94863 T/C 0.387755 1 57 0 90 ref.fa 94967 C/A 0.0277778 4 140 0 0 ref.fa 95002 T/C 0.151899 1 24 0 134 ref.fa 95004 G/C 0.104575 0 16 137 0 ref.fa 95044 G/T 0.111111 0 0 136 17 ref.fa 95090 C/A 0.0381679 5 126 0 0 ref.fa 95149 A/G 0.0263158 148 0 4 0 ref.fa 95183 C/A 0.366667 55 95 0 0 ref.fa 95217 C/A 0.259494 41 117 0 0 ref.fa 95268 C/G 0.0127389 0 155 2 0 ref.fa 95308 G/A 0.0705128 11 0 145 0 ref.fa 95315 T/G 0.0166667 0 0 3 177 ref.fa 95403 T/C 0.387597 0 50 0 79 ref.fa 95407 T/C 0.280303 0 37 0 95 ref.fa 95555 A/C 0.43949 88 69 0 0 ref.fa 95637 C/G 0.414634 0 96 68 0 ref.fa 95699 T/A 0.0828402 14 0 0 155 ref.fa 95792 T/C 0.0205479 0 3 0 143 ref.fa 95876 A/G 0.20155 103 0 26 0 ref.fa 95892 T/G 0.395973 0 0 59 90 ref.fa 95968 C/A 0.105263 14 119 0 0 ref.fa 95993 T/A 0.0140845 2 0 0 140 ref.fa 95999 C/A 0.23913 33 105 0 0 ref.fa 96004 G/A 0.0283688 4 0 137 0 ref.fa 96079 T/G 0.0431655 0 0 6 133 ref.fa 96167 A/T 0.330645 83 0 0 41 ref.fa 96198 T/C 0.027027 0 4 0 144 ref.fa 96201 G/A 0.401361 59 0 88 0 ref.fa 96225 C/G 0.478261 0 72 66 0 ref.fa 96265 A/C 0.18 123 27 0 0 ref.fa 96296 C/A 0.0254777 4 153 0 0 ref.fa 96314 G/A 0.473282 62 0 69 0 ref.fa 96334 A/G 0.227941 105 0 31 0 ref.fa 96345 C/T 0.0145985 0 135 0 2 ref.fa 96535 C/A 0.36 45 80 0 0 ref.fa 96584 G/A 0.0189873 3 0 155 0 ref.fa 96661 G/C 0.0333333 0 4 116 0 ref.fa 96673 C/G 0.330097 0 69 34 0 ref.fa 96679 G/C 0.433333 0 52 68 0 ref.fa 96698 T/A 0.0962963 13 0 0 122 ref.fa 96746 C/G 0.0194805 0 151 3 0 ref.fa 96761 T/G 0.0327869 0 0 4 118 ref.fa 96772 T/A 0.439252 47 0 0 60 ref.fa 96779 A/C 0.469388 52 46 0 0 ref.fa 96790 T/A 0.0992908 14 0 0 127 ref.fa 96791 C/G 0.153846 0 121 22 0 ref.fa 96812 A/C 0.0268456 145 4 0 0 ref.fa 96836 A/G 0.0746269 124 0 10 0 ref.fa 96859 G/T 0.415094 0 0 93 66 ref.fa 96887 G/T 0.153333 0 0 127 23 ref.fa 96899 T/A 0.355828 58 0 0 105 ref.fa 96956 T/A 0.0744681 14 0 0 174 ref.fa 97027 T/G 0.376623 0 0 58 96 ref.fa 97049 G/C 0.442308 0 69 87 0 ref.fa 97138 T/C 0.434109 0 56 0 73 ref.fa 97163 A/C 0.428571 80 60 0 0 ref.fa 97336 T/A 0.109827 19 0 0 154 ref.fa 97479 T/G 0.215278 0 0 31 113 ref.fa 97585 G/A 0.0405405 6 0 142 0 ref.fa 97597 A/G 0.0133333 148 0 2 0 ref.fa 97615 A/C 0.101911 141 16 0 0 ref.fa 97623 G/C 0.0375 0 6 154 0 ref.fa 97644 G/A 0.0206897 3 0 142 0 ref.fa 97666 A/G 0.328767 98 0 48 0 ref.fa 97746 C/G 0.4 0 78 52 0 ref.fa 97753 T/G 0.0247934 0 0 3 118 ref.fa 97772 T/C 0.0921986 0 13 0 128 ref.fa 97791 C/G 0.144578 0 142 24 0 ref.fa 97859 T/C 0.163636 0 27 0 138 ref.fa 97895 T/G 0.0204082 0 0 3 144 ref.fa 97987 T/G 0.394161 0 0 54 83 ref.fa 98026 T/G 0.422222 0 0 57 78 ref.fa 98051 C/A 0.0162602 2 121 0 0 ref.fa 98113 G/C 0.475 0 57 63 0 ref.fa 98137 C/A 0.0526316 8 144 0 1 ref.fa 98155 G/T 0.0828025 0 0 144 13 ref.fa 98224 C/A 0.490566 52 54 0 0 ref.fa 98229 A/G 0.479675 64 0 59 0 ref.fa 98286 T/G 0.0243902 0 0 4 160 ref.fa 98300 G/C 0.025 0 4 156 0 ================================================= chromsome:ref.fa Polymorphism Sites:98344 NT Read_name Read_site quality score G reads165221 15 40 G reads97654 15 40 G reads39962 15 33 G reads40422 15 40 T reads835719 16 40 G reads541550 16 40 G reads804123 16 40 G reads265286 16 40 G reads727275 17 40 G reads80954 17 40 G reads213405 17 30 G reads690767 17 40 T reads439725 17 40 G reads799129 17 40 G reads850378 18 40 G reads561675 19 25 G reads57347 19 40 G reads395381 19 40 G reads711168 19 40 G reads696750 20 36 G reads774012 20 35 G reads234946 20 40 G reads549084 20 27 G reads525827 20 40 G reads341946 21 40 G reads2321 21 40 G reads449734 22 40 G reads612385 23 40 G reads429368 24 40 G reads796469 24 40 G reads151027 24 40 G reads133204 24 40 G reads641065 25 28 G reads495260 25 40 G reads519447 25 40 G reads548583 26 36 G reads793 26 39 G reads399462 29 40 G reads342803 31 40 G reads170020 34 38 G reads133833 34 40 G reads613841 15 40 G reads158965 15 40 G reads343014 15 40 G reads168372 15 40 G reads509105 14 40 G reads440719 14 40 G reads525606 14 40 G reads448222 14 40 G reads840732 13 40 G reads394731 13 40 G reads681902 13 40 G reads705489 13 40 G reads391066 13 40 G reads848816 13 40 G reads466671 13 40 G reads237622 13 40 G reads631832 13 40 G reads733391 13 40 G reads151842 13 40 G reads648478 12 40 G reads38238 12 40 G reads377632 12 40 G reads184413 12 40 G reads548326 12 40 G reads581768 12 40 G reads564942 11 36 G reads26787 11 40 G reads769400 11 40 G reads488295 10 40 G reads305891 10 40 G reads418182 10 40 G reads562061 10 40 G reads283602 10 40 G reads742617 10 40 G reads85965 9 40 G reads339314 9 40 G reads375222 9 40 G reads166580 8 40 G reads355274 8 40 G reads465910 8 40 G reads138839 8 40 G reads739603 8 40 G reads159516 8 40 G reads271404 8 40 G reads212506 8 40 G reads155168 8 40 G reads773062 8 40 G reads399066 8 40 G reads101829 7 40 G reads23314 7 40 G reads844226 7 40 G reads660590 7 40 G reads746605 7 40 G reads237853 6 40 G reads180218 6 40 G reads595194 6 40 G reads354504 6 40 G reads794855 6 40 G reads463384 6 40 G reads420497 6 40 G reads565830 6 40 G reads536685 6 40 G reads488033 5 40 G reads453645 5 40 G reads210020 5 40 G reads336933 5 40 G reads503161 5 40 G reads839030 5 40 G reads126552 5 40 G reads663182 5 40 G reads172710 5 40 G reads503170 5 40 G reads271087 5 40 G reads460591 4 40 G reads645866 4 40 G reads641372 4 40 G reads577360 4 40 G reads145675 4 40 G reads75561 3 40 G reads736522 3 40 G reads335382 3 40 G reads269793 2 40 G reads75693 2 40 G reads413559 2 40 G reads28822 2 40 G reads32168 2 40 G reads478574 2 40 G reads34865 1 40 G reads731865 1 40 G reads184311 1 40 G reads491129 1 40 G reads660779 1 40 G reads358843 1 40 chromsome:ref.fa Polymorphism Sites:98356 NT Read_name Read_site quality score G reads48353 8 40 A reads50785 8 40 A reads500166 9 40 A reads487458 9 40 A reads129265 9 40 A reads29365 9 40 A reads477342 9 40 A reads842783 9 40 A reads642806 9 40 G reads6846 9 40 A reads791517 9 40 A reads224533 10 40 A reads672538 10 40 A reads733848 10 40 A reads304392 10 40 A reads538313 10 40 A reads831484 10 40 A reads267723 10 40 A reads19675 11 40 A reads641679 11 40 A reads381907 11 40 A reads418420 11 40 A reads282373 11 40 A reads821939 11 40 A reads844261 11 39 A reads738675 11 40 G reads578595 11 40 A reads318026 11 40 A reads701382 11 40 A reads88369 12 27 A reads616532 12 40 A reads647233 12 40 G reads792171 12 40 A reads592359 12 40 A reads660779 13 40 A reads491129 13 40 A reads184311 13 28 G reads731865 13 40 A reads34865 13 40 A reads478574 14 40 A reads32168 14 31 A reads28822 14 40 A reads75693 14 27 A reads269793 14 40 A reads335382 15 40 A reads736522 15 40 A reads75561 15 40 A reads168422 16 40 A reads577360 16 40 A reads641372 16 40 A reads645866 16 40 A reads460591 16 40 A reads271087 17 34 A reads172710 17 36 G reads126552 17 40 A reads503161 17 40 A reads210020 17 40 A reads453645 17 40 A reads420497 18 40 A reads463384 18 26 A reads794855 18 40 A reads180218 18 38 A reads237853 18 40 A reads746605 19 40 A reads660590 19 40 A reads844226 19 40 A reads23314 19 40 A reads155168 20 40 A reads159516 20 40 A reads739603 20 31 G reads138839 20 40 A reads394219 20 40 A reads465910 20 40 A reads166580 20 40 A reads375222 21 40 A reads339314 21 27 A reads742617 22 40 A reads283602 22 40 A reads562061 22 40 A reads581768 24 40 A reads184413 24 40 A reads377632 24 40 A reads38238 24 40 A reads633618 24 39 A reads648478 24 40 A reads151842 25 40 A reads631832 25 25 A reads681902 25 40 A reads384407 25 39 G reads840732 25 40 G reads448222 26 40 A reads343014 27 40 A reads97654 27 40 G reads804123 28 40 A reads439725 29 39 A reads711168 31 40 A reads525827 32 40 A reads449734 34 28 A reads612385 35 33 A reads14283 8 40 A reads570958 8 40 A reads461285 7 40 A reads394203 7 40 A reads450467 7 40 A reads617633 7 40 A reads249153 7 40 A reads155681 7 40 A reads790573 6 40 A reads351962 6 40 A reads682211 6 40 A reads791272 6 40 A reads121328 5 40 A reads778973 5 40 A reads313037 5 40 A reads307902 5 40 A reads227012 5 40 A reads221501 5 40 A reads458919 5 40 A reads335479 5 40 A reads245106 5 40 A reads764145 4 40 A reads497339 4 40 A reads163931 4 40 A reads285848 4 40 A reads789070 4 40 A reads516584 4 40 A reads537552 4 40 A reads357118 4 40 A reads565651 4 40 A reads68792 3 40 A reads710785 3 40 A reads60966 3 40 A reads56027 3 40 A reads58222 3 40 A reads86075 2 40 A reads152471 2 40 A reads608630 2 40 A reads634013 2 40 A reads94572 2 40 A reads33766 2 40 A reads410862 2 40 A reads344627 1 40 A reads559206 1 40 A reads791003 1 40 A reads472710 1 40 A reads183530 1 40 A reads128813 1 40 A reads132676 1 40 chromsome:ref.fa Polymorphism Sites:98357 NT Read_name Read_site quality score T reads171085 1 40 T reads188922 1 40 T reads6017 1 40 T reads348463 1 40 T reads397461 1 40 G reads440538 1 40 G reads846656 1 40 T reads11756 1 40 T reads809526 1 40 T reads158839 1 40 T reads7662 1 40 T reads132676 2 40 T reads128813 2 40 T reads183530 2 40 T reads472710 2 40 T reads791003 2 40 T reads559206 2 40 T reads344627 2 40 G reads410862 3 40 G reads33766 3 40 T reads94572 3 40 T reads634013 3 40 T reads608630 3 40 T reads152471 3 40 G reads86075 3 40 T reads58222 4 40 G reads56027 4 40 T reads60966 4 40 G reads710785 4 40 G reads68792 4 40 G reads565651 5 40 T reads357118 5 40 T reads537552 5 40 G reads516584 5 40 T reads789070 5 40 T reads285848 5 40 G reads163931 5 40 G reads497339 5 40 G reads764145 5 40 T reads245106 6 40 T reads335479 6 40 G reads458919 6 38 G reads221501 6 40 G reads227012 6 40 T reads307902 6 40 T reads313037 6 40 T reads778973 6 40 G reads121328 6 40 G reads791272 7 40 T reads682211 7 40 T reads351962 7 38 T reads790573 7 40 G reads684345 7 36 T reads155681 8 40 T reads249153 8 40 G reads617633 8 40 G reads394203 8 40 G reads461285 8 40 G reads570958 9 40 G reads14283 9 40 T reads48353 9 40 T reads50785 9 40 T reads500166 10 40 G reads487458 10 40 T reads129265 10 40 G reads29365 10 40 G reads477342 10 40 T reads842783 10 40 T reads642806 10 40 T reads6846 10 40 T reads791517 10 40 G reads224533 11 40 T reads672538 11 40 G reads733848 11 40 G reads304392 11 40 G reads538313 11 40 G reads831484 11 40 T reads267723 11 40 T reads19675 12 40 T reads641679 12 40 T reads282373 12 40 T reads821939 12 40 T reads578595 12 40 T reads318026 12 38 T reads32501 12 40 G reads701382 12 40 G reads88369 13 40 T reads616532 13 40 T reads79573 13 40 T reads647233 13 40 T reads792171 13 40 G reads592359 13 40 G reads491129 14 40 T reads184311 14 40 T reads731865 14 40 T reads34865 14 40 T reads478574 15 40 T reads32168 15 40 T reads28822 15 40 G reads75693 15 40 T reads269793 15 40 G reads335382 16 40 T reads736522 16 29 T reads75561 16 40 G reads168422 17 40 T reads577360 17 40 G reads641372 17 40 G reads645866 17 40 T reads271087 18 35 T reads172710 18 40 T reads126552 18 27 T reads503161 18 40 G reads210020 18 40 T reads453645 18 33 T reads420497 19 40 T reads463384 19 39 T reads794855 19 40 T reads180218 19 40 T reads746605 20 40 T reads660590 20 40 G reads844226 20 40 G reads23314 20 40 G reads155168 21 40 T reads271404 21 40 T reads159516 21 40 G reads739603 21 35 T reads138839 21 40 T reads394219 21 40 T reads465910 21 36 G reads166580 21 40 G reads375222 22 34 T reads339314 22 28 G reads742617 23 40 G reads283602 23 32 T reads562061 23 36 T reads305891 23 40 T reads581768 25 28 G reads184413 25 40 G reads377632 25 40 T reads38238 25 40 T reads151842 26 40 T reads681902 26 40 T reads840732 26 40 T reads448222 27 38 T reads343014 28 40 T reads97654 28 36 T reads711168 32 40 G reads525827 33 40 G reads2321 34 29 T reads449734 35 30 chromsome:ref.fa Polymorphism Sites:45 NT Read_name Read_site quality score C reads743804 3 40 G reads378950 3 40 C reads514631 3 40 G reads654919 3 40 G reads839849 3 40 G reads46805 4 40 G reads359743 4 40 G reads729679 4 40 G reads673558 4 40 G reads634946 4 40 G reads362700 5 40 G reads44164 5 40 G reads358825 5 40 G reads355781 5 40 G reads76878 5 40 C reads714271 5 40 G reads266505 5 40 G reads358628 5 40 G reads150289 5 40 C reads442523 6 37 G reads752551 6 40 G reads555683 6 40 G reads630384 6 40 G reads493681 6 40 G reads672947 6 40 G reads39473 6 40 C reads664025 6 40 G reads609573 6 40 G reads450958 7 40 G reads356390 7 40 G reads53382 7 40 G reads563032 7 32 G reads424417 7 40 G reads56067 7 40 C reads324579 7 40 G reads419255 7 40 G reads1638 7 40 G reads604356 8 40 G reads300800 8 40 G reads825308 8 40 G reads359238 8 40 C reads231651 8 40 G reads601745 8 40 G reads129127 8 40 C reads464955 8 40 G reads362247 9 40 G reads609818 9 28 G reads749060 9 40 G reads213987 9 40 G reads688098 9 40 G reads745075 9 40 G reads207278 9 40 G reads245463 9 40 G reads289096 9 40 G reads652892 9 40 G reads259783 10 40 G reads123682 10 40 G reads531626 10 40 G reads273354 10 36 G reads166280 11 40 G reads826295 11 25 G reads776698 11 40 C reads699490 11 40 G reads251094 11 40 G reads725333 11 40 G reads832723 11 40 G reads696330 11 40 G reads628319 12 40 G reads715062 12 40 G reads409063 12 40 G reads229861 12 36 G reads139276 12 40 G reads538086 12 40 G reads603265 12 40 G reads842449 12 40 G reads319397 13 40 G reads789507 13 40 G reads57380 14 40 G reads327768 14 40 G reads272733 14 40 G reads10288 15 40 G reads590632 15 40 G reads410536 15 40 G reads389653 15 40 G reads769952 15 40 G reads260793 15 40 G reads355676 16 40 G reads585622 16 40 G reads505085 16 34 G reads774301 16 40 G reads765014 17 40 G reads604914 17 40 G reads638886 18 40 G reads410841 18 35 G reads216567 19 40 G reads375514 19 40 G reads287704 20 40 G reads280680 20 40 G reads751155 20 40 G reads441613 20 40 G reads791353 20 40 G reads689042 21 40 G reads570273 21 40 G reads706651 22 29 G reads47554 22 40 G reads155426 22 40 G reads815593 23 40 G reads91714 24 40 G reads393792 24 28 G reads562874 25 40 G reads167378 25 40 G reads317151 25 40 C reads514402 26 40 G reads667560 26 40 C reads815986 27 40 G reads790568 27 40 G reads248828 29 40 G reads84999 29 40 G reads704663 30 40 G reads549902 32 28 G reads733084 32 40 C reads469135 32 40 G reads790582 34 40 G reads509056 35 40 G reads380298 35 40 G reads772954 2 40 G reads344005 2 40 G reads366903 2 40 G reads189424 2 40 G reads718989 2 40 G reads447537 2 40 G reads648846 2 40 G reads200544 2 40 G reads253688 1 40 G reads670596 1 40 G reads199526 1 40 G reads58429 1 40 G reads25454 1 40 G reads569721 1 40 G reads597686 1 40 chromsome:ref.fa Polymorphism Sites:98440 NT Read_name Read_site quality score A reads613133 1 40 G reads284886 1 40 A reads492910 1 40 A reads579455 1 40 G reads806258 1 40 G reads486561 2 40 G reads122945 2 40 A reads676756 2 40 A reads273614 2 40 G reads419745 2 40 G reads739071 2 40 A reads47668 2 40 A reads685049 3 40 A reads491699 3 40 A reads495553 3 40 G reads447003 3 40 G reads436562 3 40 G reads350145 3 40 A reads796143 3 40 G reads530118 3 40 G reads810337 3 40 G reads544246 4 40 G reads220635 4 40 A reads312652 4 40 A reads616758 5 40 A reads79975 5 40 G reads689172 5 40 G reads431169 5 40 G reads130636 5 40 G reads802107 5 40 G reads415452 6 40 A reads746150 6 40 G reads453170 6 40 A reads308603 6 40 A reads423164 6 40 A reads675 6 40 A reads209546 7 40 A reads106165 7 40 G reads801057 7 40 A reads739137 7 40 A reads778258 7 38 A reads139989 7 40 G reads465342 7 40 G reads117026 7 40 G reads781273 7 40 G reads721497 7 40 G reads236643 8 40 A reads155577 8 40 A reads249780 8 40 A reads233895 8 40 G reads665966 9 40 G reads119985 9 40 G reads734397 9 40 A reads197564 9 40 A reads717875 10 40 G reads629143 10 28 A reads625173 10 40 A reads400599 10 40 G reads714992 10 40 A reads495539 10 40 A reads86613 10 40 A reads177526 10 40 A reads522668 10 40 G reads823585 10 40 A reads824422 10 40 G reads624886 11 40 A reads797195 11 40 G reads202048 11 40 A reads520208 11 40 A reads409463 11 40 A reads61636 12 40 A reads581549 12 40 A reads346610 12 40 A reads702237 12 40 G reads135128 13 40 A reads239941 13 40 G reads533896 13 40 G reads797350 13 40 G reads719938 13 40 A reads368325 13 32 G reads852616 13 40 G reads598244 14 40 G reads243031 14 40 A reads94563 14 40 A reads699461 14 40 A reads363329 14 40 G reads369992 14 40 A reads247011 15 40 A reads194032 15 28 G reads628244 15 40 A reads535770 15 40 G reads470136 16 40 G reads348437 16 40 A reads39389 18 40 G reads43447 18 40 G reads133517 18 39 A reads615996 18 40 A reads150445 19 40 G reads307447 19 40 G reads353941 19 35 A reads174063 19 40 G reads546199 20 40 A reads274792 20 40 A reads433950 20 40 A reads71895 20 40 G reads248975 21 40 G reads428033 21 40 A reads451427 21 40 A reads364797 21 40 G reads548337 21 40 G reads641261 21 40 G reads249520 22 40 G reads15539 23 40 A reads514954 23 32 A reads143150 23 31 A reads198191 23 31 G reads416588 24 40 A reads786326 25 31 G reads288012 25 33 G reads744292 25 40 G reads262320 26 40 A reads548031 26 40 A reads314153 28 40 G reads331406 28 40 G reads86039 33 33 A reads740384 33 28 G reads439236 1 40 G reads332888 1 40 chromsome:ref.fa Polymorphism Sites:127 NT Read_name Read_site quality score G reads596105 1 40 T reads723368 1 40 T reads228737 1 40 T reads100102 1 40 T reads632360 1 40 T reads830423 1 40 G reads673994 1 40 T reads80836 1 40 T reads208032 2 40 T reads554917 2 40 T reads210175 2 40 T reads433998 2 40 T reads370427 2 40 T reads8496 2 40 T reads252286 3 40 T reads447734 3 40 T reads458499 3 40 T reads208232 3 40 T reads725807 3 40 T reads644850 3 40 T reads760708 4 40 G reads446591 4 40 T reads722343 4 40 T reads538900 4 40 T reads597097 4 40 G reads360250 4 40 T reads664752 5 40 T reads447926 5 40 T reads242334 5 40 G reads85061 5 40 G reads541532 6 40 T reads535088 6 40 T reads409650 6 40 G reads547395 6 40 T reads371663 6 40 T reads629671 6 40 T reads461840 6 40 G reads662536 7 40 T reads559427 7 40 T reads826447 7 40 G reads417230 7 40 T reads182982 7 40 T reads782865 8 40 T reads221799 8 40 T reads206642 8 40 G reads7754 8 40 T reads229055 8 40 G reads629000 8 40 G reads347342 9 40 T reads340064 9 40 T reads28391 9 40 T reads262306 9 40 T reads606509 9 37 T reads66663 10 40 T reads60760 10 40 T reads100320 10 40 T reads388795 10 40 T reads535695 10 34 T reads703437 10 40 G reads335880 10 40 T reads364577 10 40 G reads545961 11 40 T reads784156 11 40 T reads558982 11 40 T reads339669 11 40 T reads286723 11 40 T reads736832 11 40 T reads414363 12 40 G reads236409 12 40 T reads199716 12 40 T reads166089 12 28 G reads76603 12 40 T reads503013 13 30 T reads305454 13 37 G reads593730 13 40 G reads439295 13 40 G reads660799 13 40 T reads13156 14 40 G reads370424 14 40 T reads86051 14 40 T reads583487 14 40 T reads653323 14 40 T reads183217 14 27 T reads714700 14 40 T reads240958 14 40 G reads13491 14 40 T reads287464 15 40 T reads826077 15 40 T reads188446 15 31 T reads84286 16 40 T reads709990 16 40 T reads286267 16 40 T reads517695 16 32 T reads139616 16 40 T reads345190 17 40 T reads228410 17 40 T reads199563 17 40 T reads714696 17 40 T reads607473 17 40 T reads281723 17 40 G reads470354 17 40 T reads622629 18 40 T reads53186 18 40 T reads239376 18 26 G reads28262 18 26 T reads730791 18 40 T reads108398 19 40 T reads125215 19 40 T reads293940 20 40 T reads518569 20 27 T reads633701 20 40 G reads62958 21 33 T reads217371 21 33 T reads602582 21 40 T reads509781 21 28 T reads86082 21 28 T reads756314 21 40 T reads630248 21 40 T reads101127 22 40 T reads660608 22 40 T reads668401 22 40 T reads388967 22 40 T reads86164 22 40 G reads28573 23 30 T reads638762 23 40 T reads479553 23 40 T reads782538 24 31 T reads412500 25 40 T reads712392 26 40 T reads125019 26 40 T reads288314 26 30 T reads592487 26 40 T reads742090 27 40 T reads84005 28 31 T reads591013 31 40 G reads846575 32 40 T reads714274 32 40 G reads672227 33 40 T reads176640 34 35 G reads579244 35 36 T reads236176 35 40 T reads493584 1 40 T reads447334 1 40 T reads83129 1 40 chromsome:ref.fa Polymorphism Sites:98513 NT Read_name Read_site quality score T reads438052 1 40 C reads72191 1 40 T reads761711 1 40 T reads751754 1 40 T reads207345 1 40 T reads203230 1 40 T reads127052 1 40 T reads131651 1 40 T reads70187 1 40 T reads220280 2 40 T reads15940 2 40 T reads565488 3 40 T reads710233 3 40 T reads412824 3 40 T reads819837 3 40 C reads273024 3 40 T reads838552 4 40 T reads728242 4 40 T reads406 4 40 T reads453783 4 40 T reads720970 4 40 T reads275987 4 40 T reads471084 4 40 T reads57545 4 40 T reads249006 5 40 T reads551269 5 40 T reads414181 6 40 C reads378692 6 40 T reads746146 6 40 T reads130879 6 40 T reads100414 6 40 T reads385395 6 40 T reads708288 6 40 T reads628 7 40 C reads587591 7 40 T reads216058 7 40 T reads813578 7 40 T reads804808 7 40 T reads103707 7 40 T reads52169 7 40 T reads786154 7 40 T reads519721 8 40 T reads262287 8 40 T reads748358 8 40 T reads736342 8 40 T reads129186 8 40 C reads650491 8 40 T reads503461 8 40 T reads753318 8 40 T reads580282 8 40 T reads207938 9 40 T reads765355 9 40 T reads98028 9 40 T reads818405 9 40 T reads144944 10 40 T reads853875 10 40 T reads813224 10 40 T reads108988 10 40 T reads333516 10 40 T reads158223 10 40 T reads749504 10 40 T reads221687 10 40 C reads337395 10 40 T reads141842 10 40 T reads170782 11 40 T reads156917 11 40 T reads115689 11 40 T reads227215 11 38 T reads342946 11 40 T reads619564 11 40 T reads525178 11 40 T reads578145 11 40 T reads221364 12 40 T reads381460 12 40 T reads499609 12 40 T reads465088 13 27 C reads815150 13 40 T reads404460 13 40 T reads602750 13 40 T reads135647 13 40 T reads253463 14 36 C reads552644 14 40 T reads484634 14 40 C reads333114 14 40 T reads510551 14 40 T reads550681 14 40 T reads379432 15 40 T reads34651 15 40 T reads653229 15 40 T reads550753 15 40 T reads383015 16 40 C reads520515 16 27 T reads130034 16 40 T reads453886 16 40 T reads17163 16 40 T reads250958 17 40 C reads176783 17 40 T reads642603 17 27 T reads783056 17 40 T reads394870 17 40 T reads73423 17 40 T reads124372 18 40 C reads483405 18 40 T reads190740 18 40 T reads122913 18 40 T reads500272 18 40 C reads133066 19 40 C reads609784 19 40 T reads781365 19 28 T reads479096 19 40 T reads165322 20 40 T reads411737 20 40 T reads250141 20 40 T reads740734 20 40 T reads113110 21 40 T reads117286 21 40 T reads577930 21 26 T reads234950 21 40 T reads161654 21 28 T reads856995 21 40 T reads81190 21 37 T reads698856 22 40 T reads172323 22 36 T reads316697 23 40 T reads523253 23 40 T reads216257 24 40 T reads54156 27 40 T reads435838 27 40 T reads361841 28 40 T reads783102 30 29 T reads69256 30 40 T reads736517 33 38 T reads108513 33 40 T reads58591 33 40 T reads60784 34 40 T reads759528 34 40 T reads23447 35 40 T reads759700 35 40 T reads179684 35 40 chromsome:ref.fa Polymorphism Sites:98521 NT Read_name Read_site quality score G reads65288 1 40 G reads134458 1 40 G reads710774 1 40 A reads369959 1 40 G reads487389 1 40 G reads206008 1 40 G reads799440 2 40 G reads305946 2 40 A reads318708 2 40 A reads275127 2 40 A reads337602 2 40 G reads339339 2 40 G reads49012 3 40 G reads416953 3 40 G reads70538 3 40 A reads581676 3 40 G reads667864 3 40 A reads149149 3 40 G reads786223 3 40 A reads794537 3 40 A reads396389 3 40 G reads470115 4 40 A reads28972 4 40 A reads603062 4 40 G reads122399 4 40 A reads598494 5 40 A reads569500 5 40 A reads451562 5 40 A reads745378 6 40 G reads371920 6 40 A reads771818 6 40 A reads489623 6 40 G reads644540 6 40 G reads450396 7 40 A reads549837 7 40 G reads492732 7 40 A reads162644 7 40 A reads534514 7 40 G reads771550 7 40 G reads515856 8 40 G reads164227 8 40 A reads115470 8 40 G reads22259 8 40 A reads149251 8 40 G reads123331 8 40 G reads618719 8 38 A reads172843 8 40 G reads507956 8 40 G reads438052 9 40 G reads761711 9 40 G reads751754 9 40 A reads203230 9 40 A reads127052 9 40 A reads131651 9 40 A reads70187 9 40 A reads220280 10 40 G reads565488 11 40 A reads710233 11 40 G reads412824 11 40 G reads819837 11 40 A reads838552 12 40 A reads728242 12 40 A reads406 12 40 A reads453783 12 40 G reads720970 12 40 G reads471084 12 40 G reads57545 12 26 A reads249006 13 40 A reads551269 13 40 A reads414181 14 39 G reads746146 14 27 G reads130879 14 40 G reads385395 14 40 G reads708288 14 40 A reads628 15 40 A reads804808 15 40 G reads52169 15 40 G reads748358 16 40 G reads736342 16 40 G reads129186 16 40 A reads650491 16 40 G reads503461 16 40 G reads753318 16 40 A reads580282 16 40 G reads765355 17 40 G reads98028 17 40 G reads144944 18 40 G reads853875 18 40 G reads813224 18 40 A reads108988 18 40 A reads158223 18 40 G reads221687 18 40 A reads337395 18 40 G reads156917 19 40 A reads115689 19 40 A reads227215 19 40 A reads342946 19 40 G reads619564 19 40 A reads578145 19 40 G reads221364 20 29 G reads381460 20 40 A reads537837 21 28 A reads465088 21 40 A reads602750 21 40 G reads135647 21 40 A reads552644 22 40 G reads484634 22 40 A reads333114 22 40 G reads34651 23 39 G reads414872 23 40 G reads550753 23 40 G reads453886 24 40 G reads17163 24 40 A reads642603 25 40 G reads394870 25 40 A reads73423 25 40 G reads124372 26 40 A reads781122 26 40 A reads487085 26 32 G reads695369 26 26 G reads575989 27 37 A reads165322 28 40 G reads250141 28 40 A reads740734 28 40 A reads184332 29 40 A reads117286 29 40 G reads98900 31 37 G reads418609 35 35 chromsome:ref.fa Polymorphism Sites:98548 NT Read_name Read_site quality score T reads475332 1 40 C reads834022 1 40 T reads630154 1 40 C reads685982 1 40 C reads310206 1 40 T reads610604 1 40 T reads252131 1 40 C reads533667 1 40 C reads737802 1 40 T reads149189 2 40 C reads274271 2 40 T reads595871 3 40 T reads461774 3 40 C reads746634 3 40 T reads44160 3 40 T reads535611 3 40 C reads471642 4 40 T reads403472 4 40 T reads136494 4 40 T reads505894 4 40 T reads810690 4 40 T reads130483 4 40 C reads625700 4 40 T reads744673 5 40 C reads151184 5 40 T reads440583 5 40 T reads486459 5 40 T reads327525 5 40 T reads468244 5 40 T reads338959 5 40 T reads848787 5 40 T reads536440 6 40 C reads570398 6 40 C reads204755 6 40 T reads415847 6 40 C reads19435 6 40 T reads288380 6 40 T reads589388 6 40 T reads808531 7 40 T reads187197 7 40 T reads180405 7 40 T reads693000 7 40 T reads683200 7 40 C reads639516 8 40 C reads651406 8 37 C reads753721 8 40 T reads819742 8 40 T reads51981 8 40 T reads139893 8 40 C reads460088 8 40 T reads215096 8 40 C reads101151 9 40 T reads372626 9 40 T reads401826 9 40 T reads115542 9 40 T reads781418 9 40 T reads257724 9 40 T reads426717 9 40 T reads53060 9 40 T reads209050 10 40 C reads703701 10 40 C reads292493 10 40 C reads400207 10 40 T reads809130 10 40 T reads416165 11 40 C reads103855 11 40 T reads768991 11 40 T reads400187 11 40 C reads299763 11 40 T reads199382 11 40 C reads491958 11 40 T reads377931 11 40 T reads182683 12 40 T reads103899 12 40 C reads256901 12 40 T reads501139 12 40 T reads347534 12 40 C reads2519 12 40 T reads524847 13 40 C reads289240 13 40 C reads70417 13 40 T reads254196 13 40 T reads509016 13 40 T reads362671 13 40 T reads562839 14 32 T reads623118 14 33 T reads580601 14 40 C reads840872 14 40 C reads615478 14 40 T reads595145 14 40 T reads741870 15 40 T reads530410 15 40 T reads380342 16 40 C reads475017 16 40 C reads37112 16 40 C reads356189 17 37 T reads419474 17 40 C reads214170 17 40 T reads685146 17 40 T reads364315 18 40 C reads702279 18 40 C reads549859 19 40 T reads811312 19 40 C reads580229 19 40 T reads725818 19 40 T reads355006 20 40 T reads448090 20 40 T reads142643 20 40 C reads658368 20 40 C reads265904 21 40 T reads61838 21 40 T reads444894 22 40 T reads592221 22 40 T reads334035 22 40 C reads388540 22 30 T reads501208 23 40 T reads431030 23 31 T reads744397 25 27 C reads71406 26 40 T reads589651 26 40 T reads114796 27 40 T reads603363 27 40 T reads487389 28 30 T reads667864 30 40 C reads396389 30 40 T reads122399 31 40 C reads162644 34 33 C reads115470 35 40 C reads242513 1 40 C reads397160 1 40 chromsome:ref.fa Polymorphism Sites:98557 NT Read_name Read_site quality score T reads461774 12 40 A reads746634 12 40 A reads535611 12 40 A reads403472 13 40 A reads136494 13 40 A reads505894 13 40 A reads810690 13 28 A reads151184 14 40 A reads440583 14 40 A reads486459 14 40 A reads327525 14 40 A reads468244 14 40 A reads338959 14 40 A reads536440 15 40 A reads570398 15 40 A reads204755 15 40 A reads288380 15 40 A reads589388 15 40 A reads187197 16 40 A reads180405 16 40 A reads693000 16 40 A reads639516 17 40 A reads651406 17 40 A reads753721 17 30 T reads819742 17 40 A reads51981 17 40 A reads139893 17 40 A reads460088 17 40 A reads262626 17 40 A reads215096 17 40 A reads423727 18 40 A reads115542 18 40 A reads781418 18 40 A reads257724 18 40 A reads426717 18 40 A reads53060 18 40 A reads573509 19 31 A reads292493 19 37 A reads400207 19 40 A reads416165 20 40 A reads103855 20 40 A reads299763 20 40 A reads491958 20 40 A reads377931 20 40 A reads182683 21 40 A reads256901 21 40 A reads2519 21 40 A reads524847 22 40 A reads289240 22 33 A reads254196 22 31 A reads509016 22 40 A reads562839 23 27 A reads580601 23 40 A reads840872 23 40 A reads358673 23 32 A reads615478 23 40 A reads530410 24 40 A reads380342 25 40 A reads37112 25 40 A reads356189 26 40 A reads419474 26 40 A reads702279 27 40 A reads481017 27 40 A reads549859 28 27 A reads721780 28 40 A reads811312 28 40 A reads346402 28 36 A reads636502 32 40 A reads215112 34 37 A reads71406 35 40 A reads690216 35 40 A reads456615 35 36 A reads595871 12 40 A reads274271 11 40 A reads149189 11 26 A reads737802 10 30 A reads533667 10 40 A reads252131 10 40 A reads610604 10 40 A reads310206 10 40 A reads475332 10 40 A reads242513 10 40 A reads397160 10 40 A reads288174 9 34 A reads37619 9 40 A reads604035 9 40 A reads854440 9 40 A reads759494 9 40 A reads695746 9 40 A reads467687 9 40 A reads243520 9 40 A reads154856 8 40 A reads382842 8 40 A reads753988 8 40 A reads441660 8 40 A reads363361 7 40 A reads374265 7 40 A reads402096 7 40 A reads82492 7 40 A reads692055 7 40 A reads733119 7 40 A reads247705 7 40 A reads380388 7 40 A reads649977 7 40 A reads508627 7 40 A reads552609 6 40 A reads539697 6 40 A reads245330 6 40 A reads411006 6 40 A reads217866 6 40 A reads639361 6 40 A reads638015 6 40 A reads216780 6 40 A reads537002 6 40 A reads766213 5 40 A reads327467 5 40 A reads345033 5 40 A reads777621 5 40 A reads851250 5 40 A reads133808 5 40 A reads385630 5 40 A reads344931 5 40 A reads99112 4 40 A reads78248 4 40 A reads552913 4 40 A reads726586 4 40 A reads481412 3 40 A reads185777 3 40 A reads254485 3 40 A reads741475 3 40 A reads568823 3 40 A reads765950 3 40 A reads619821 2 40 A reads757117 2 40 A reads501255 2 40 A reads439850 2 40 A reads100376 2 40 A reads700197 2 40 A reads473727 2 40 A reads289437 2 40 A reads489605 2 40 A reads777979 1 40 A reads91879 1 40 chromsome:ref.fa Polymorphism Sites:98625 NT Read_name Read_site quality score C reads322684 1 40 G reads547316 1 40 C reads430308 1 40 C reads564686 1 40 G reads451986 1 40 C reads299140 1 40 C reads452085 1 40 C reads382168 1 40 G reads626945 1 40 G reads274338 1 40 G reads360709 1 40 C reads251193 1 40 G reads401015 1 40 G reads418285 2 40 G reads653588 2 40 G reads770243 2 40 G reads115184 2 40 C reads769539 2 40 G reads92324 3 40 C reads153070 3 40 G reads206262 3 40 C reads474151 3 40 C reads15164 3 40 C reads6030 4 40 C reads302684 4 40 G reads38366 4 40 C reads31820 4 40 C reads281011 4 40 G reads386178 4 40 G reads45062 4 40 C reads668024 5 40 G reads160533 5 40 C reads621925 5 40 C reads508364 5 40 C reads455565 5 40 C reads342926 5 40 G reads395344 5 40 C reads706095 5 40 C reads359749 5 40 C reads165790 6 40 G reads182720 6 40 C reads577972 6 40 C reads579953 6 40 C reads343463 6 40 C reads276547 6 40 G reads460237 6 40 C reads438058 6 40 C reads415160 7 40 G reads129346 7 40 C reads795691 7 40 C reads545041 7 40 C reads583617 7 40 C reads1691 7 40 G reads835861 8 40 C reads780714 8 27 C reads517225 8 40 C reads785950 8 40 C reads94262 8 40 C reads154866 8 40 C reads192077 9 40 C reads416740 9 40 G reads383087 9 40 C reads547075 9 40 C reads728173 9 40 C reads749388 9 40 C reads77819 9 40 C reads63493 10 40 G reads535475 10 40 C reads786081 10 40 C reads417703 10 40 G reads118290 10 40 G reads743308 10 40 C reads166629 10 40 C reads358029 11 40 G reads505567 11 40 C reads445452 11 40 C reads53132 11 40 C reads799018 11 40 G reads665458 12 40 C reads39770 12 40 C reads516051 12 40 G reads179835 12 40 G reads530220 13 40 G reads643572 13 40 C reads803957 13 40 C reads73500 13 40 G reads730607 13 40 C reads33195 13 40 C reads83823 13 40 C reads362915 13 40 C reads283533 13 40 G reads467591 13 40 C reads654962 13 40 G reads768158 14 40 G reads593275 14 40 G reads523162 14 35 C reads280402 14 40 G reads431619 14 40 C reads69380 15 40 C reads515446 15 40 C reads71870 15 40 C reads643744 16 40 C reads186442 16 40 G reads220640 16 27 C reads155243 17 40 C reads348831 17 40 G reads668938 17 40 C reads264684 18 40 C reads672531 18 40 C reads473398 18 40 C reads251892 18 40 G reads186276 19 31 C reads33899 19 40 C reads39525 19 40 C reads127450 19 40 C reads447440 20 39 C reads248724 20 40 G reads47420 20 36 C reads190226 20 40 G reads33321 21 40 G reads569789 21 40 C reads414153 21 40 C reads105550 21 40 C reads850568 21 40 C reads730776 21 40 C reads627719 21 40 G reads668204 22 40 C reads434988 23 40 C reads831321 23 40 G reads308380 23 40 G reads679177 24 40 C reads558456 24 34 C reads370520 24 40 G reads72578 26 40 C reads814467 26 38 G reads295571 30 32 G reads119777 30 28 C reads578564 31 40 C reads333501 35 40 C reads712806 35 34 chromsome:ref.fa Polymorphism Sites:98648 NT Read_name Read_site quality score T reads576976 1 40 T reads29864 1 40 T reads703236 1 40 A reads105453 1 40 T reads318520 2 40 A reads774191 2 40 A reads29170 2 40 A reads649716 2 40 T reads364758 2 40 T reads856627 2 40 T reads770653 2 40 T reads174664 2 40 T reads844568 2 40 T reads641175 2 40 A reads122454 2 40 T reads320006 2 40 T reads469514 3 40 A reads27777 3 40 T reads318055 3 40 T reads418079 3 40 T reads558366 3 40 A reads140299 3 40 A reads282074 4 40 T reads495850 4 40 T reads478735 4 40 T reads585862 4 40 A reads350269 4 40 A reads427564 5 40 A reads74935 5 40 A reads711129 5 40 A reads462735 5 40 T reads231204 5 40 T reads485048 5 40 A reads261638 6 40 A reads352621 6 40 A reads45624 6 40 T reads687846 7 40 T reads791196 7 40 T reads353638 7 40 T reads337978 7 40 T reads576623 7 40 A reads735678 7 33 A reads30302 8 40 T reads365327 8 40 T reads669374 8 40 T reads787250 8 40 A reads808196 8 40 T reads196899 8 40 T reads233390 9 39 T reads300990 9 40 T reads350765 9 40 A reads604348 9 40 T reads251366 9 40 A reads481610 9 40 A reads148390 9 40 T reads22308 10 40 T reads157819 10 40 T reads178036 10 40 T reads424557 10 40 T reads674640 11 40 A reads418900 11 40 T reads778616 11 40 T reads368880 11 40 A reads130477 11 40 T reads5397 11 40 A reads413878 11 40 T reads66065 11 40 A reads453123 11 40 A reads433432 11 40 A reads638737 11 40 T reads838284 12 40 A reads300802 12 40 T reads77115 12 40 A reads228917 12 40 T reads511776 12 40 A reads288237 12 40 T reads55141 12 40 T reads432270 12 40 T reads763486 12 40 T reads574548 13 40 T reads139098 13 40 T reads341798 13 40 T reads115425 13 40 T reads218832 13 40 A reads237887 13 40 A reads463546 13 40 T reads452968 13 40 A reads527730 13 40 A reads643591 14 40 T reads721364 14 40 T reads146151 14 40 A reads743940 14 40 A reads96055 14 40 A reads169412 14 40 A reads254455 14 40 A reads574438 14 40 T reads22934 15 40 T reads334441 16 40 A reads86423 16 40 A reads735981 16 40 A reads728957 16 40 A reads416536 16 40 T reads41109 16 40 T reads48251 16 40 T reads187709 16 40 A reads7289 17 40 A reads364548 17 40 A reads613225 17 40 A reads810651 17 36 A reads79960 17 40 T reads337391 17 40 T reads511978 17 40 T reads699804 18 40 A reads401510 18 40 T reads854621 18 34 A reads751211 19 40 T reads619992 19 40 T reads479008 19 40 T reads293290 19 25 T reads494105 19 40 T reads146614 19 40 T reads774169 19 40 T reads113779 20 40 T reads846674 20 38 T reads446463 20 40 A reads524540 21 26 T reads609765 21 40 T reads427555 21 40 T reads515657 21 40 T reads621506 22 40 A reads280564 23 40 A reads485720 23 40 T reads177062 23 40 T reads430308 24 28 T reads564686 24 40 T reads382168 24 40 A reads418285 25 40 A reads92324 26 40 A reads206262 26 40 T reads474151 26 40 T reads302684 27 40 A reads386178 27 39 T reads455565 28 27 A reads182720 29 40 T reads579953 29 40 T reads276547 29 40 T reads785950 31 40 A reads383087 32 30 A reads505567 34 27 T reads445452 34 40 chromsome:ref.fa Polymorphism Sites:98690 NT Read_name Read_site quality score G reads694704 1 40 T reads259919 1 40 T reads688522 1 40 T reads207770 1 40 T reads785370 1 40 T reads822280 1 40 T reads645855 1 40 T reads13565 1 40 G reads273834 1 40 T reads662887 2 40 T reads145084 2 40 T reads837114 2 40 T reads541929 2 40 T reads577831 2 40 T reads329949 2 40 T reads347829 2 40 T reads213829 2 40 T reads780060 2 40 T reads57502 3 40 T reads356545 3 40 T reads227344 3 40 T reads656398 3 40 T reads71554 3 40 T reads418201 3 40 T reads42723 4 40 T reads823037 4 40 T reads312269 4 40 T reads393898 4 40 T reads848500 4 40 T reads269308 4 40 T reads318717 4 40 T reads754554 5 40 T reads238946 5 40 T reads81979 5 40 T reads426531 5 40 T reads2848 5 40 T reads660634 5 40 T reads599243 5 40 T reads81787 5 40 T reads543257 6 40 T reads113322 6 40 T reads235452 6 40 T reads226098 6 40 T reads701422 6 40 T reads226202 6 40 T reads250428 6 40 T reads305134 6 40 T reads526592 6 40 T reads576301 7 40 T reads534054 7 40 T reads668368 7 40 T reads497464 7 40 T reads2868 7 40 T reads236426 7 40 T reads647859 7 40 T reads623054 7 40 G reads216672 7 40 T reads315624 7 40 T reads257988 8 40 T reads526606 8 40 T reads598166 8 40 T reads137554 8 40 T reads755543 8 40 T reads524080 8 40 T reads242296 8 40 T reads203260 9 40 T reads611329 9 40 G reads849257 9 40 T reads692528 9 40 T reads7062 9 40 T reads734889 9 40 G reads215025 9 40 T reads664669 9 40 T reads355361 10 40 T reads354696 10 40 T reads8128 10 40 T reads543264 10 40 T reads555701 10 40 T reads754731 10 40 T reads694849 10 40 T reads86645 10 40 T reads342801 10 40 T reads650394 10 40 T reads269835 10 40 T reads844505 10 40 T reads702228 11 40 T reads834183 11 40 T reads303351 11 40 T reads788015 11 40 T reads399154 11 40 T reads655942 11 40 T reads780468 11 27 T reads393865 11 38 T reads532396 11 25 T reads759085 11 40 T reads688732 11 40 T reads280014 11 40 T reads739585 11 40 T reads365111 11 40 T reads366004 11 26 T reads297659 12 40 T reads680984 12 40 T reads519481 12 40 T reads271570 12 40 T reads399594 12 40 T reads130026 13 40 T reads541738 13 40 G reads212630 13 40 G reads736955 13 40 T reads706775 13 40 T reads645799 13 40 T reads69313 14 40 T reads579814 14 40 T reads234340 15 40 T reads186237 15 40 T reads247383 15 40 T reads197265 16 25 T reads775189 16 40 T reads710280 16 40 T reads792789 16 40 T reads237758 17 31 T reads529542 17 40 T reads827414 17 40 T reads717631 17 40 T reads844478 17 40 T reads241442 18 40 T reads703259 18 40 T reads721686 18 40 G reads824527 18 40 T reads621913 19 40 T reads723687 19 40 T reads130381 19 40 T reads106519 19 40 T reads328826 19 40 T reads476218 19 40 T reads581825 19 40 T reads248777 19 40 T reads345867 19 40 T reads704047 19 40 T reads788509 20 40 T reads308173 20 40 T reads501721 20 33 T reads771338 20 40 T reads645290 20 40 T reads56907 21 40 T reads537471 21 40 T reads507423 21 37 T reads206858 22 33 T reads798388 22 40 T reads533196 22 40 T reads173273 23 40 T reads152776 24 40 T reads750443 24 40 T reads597726 24 40 T reads629858 24 40 T reads456266 25 35 T reads763797 26 40 T reads1043 29 40 T reads530304 30 40 T reads78674 30 40 T reads387330 32 40 T reads99459 34 40 T reads252262 34 40 T reads536606 35 40 T reads724857 35 40 T reads289402 1 40 T reads795652 1 40 chromsome:ref.fa Polymorphism Sites:394 NT Read_name Read_site quality score C reads43076 4 40 G reads585969 4 40 G reads359205 4 40 G reads193229 4 40 G reads725842 4 40 G reads789327 4 40 G reads213577 4 40 G reads725540 4 40 G reads730402 4 40 C reads298449 4 40 G reads724538 5 40 G reads277224 5 40 C reads9323 5 40 G reads770985 5 40 G reads699800 5 40 G reads17341 6 40 G reads621126 6 40 G reads805791 6 40 G reads135571 6 40 G reads258097 6 40 G reads734393 6 40 G reads74333 7 40 G reads335646 7 40 G reads191574 7 40 G reads797620 7 40 G reads502137 7 40 G reads800497 7 40 G reads36174 7 40 G reads28387 7 40 G reads617231 7 40 G reads75692 7 40 G reads762538 7 40 G reads617802 7 40 G reads525967 7 40 G reads69457 8 40 G reads714206 8 40 G reads570053 8 40 G reads150464 8 40 G reads764752 8 25 G reads162604 8 40 G reads126143 8 40 G reads210000 8 40 G reads399860 8 40 G reads191758 8 40 G reads285798 8 40 G reads558550 8 40 G reads369054 9 40 G reads55012 9 40 G reads467953 9 40 G reads137248 9 40 G reads849204 9 40 G reads108870 9 40 G reads269022 9 40 G reads231797 9 40 G reads551554 9 40 G reads318281 9 40 G reads25784 10 40 G reads379041 10 40 G reads676715 10 40 G reads463371 10 40 G reads398812 10 40 G reads231546 10 40 G reads352079 10 40 G reads778004 10 40 G reads755654 10 40 G reads416502 10 40 G reads598736 10 40 G reads764416 11 40 G reads59621 11 40 G reads741633 11 40 G reads571838 11 40 G reads38900 11 40 G reads366158 11 40 G reads249065 11 40 G reads464747 11 40 G reads392174 11 40 G reads250124 11 40 G reads847012 12 40 G reads802814 13 40 G reads29809 13 39 G reads611196 13 40 G reads634191 13 40 G reads222570 13 40 G reads758594 13 40 G reads337588 14 40 G reads813825 14 40 G reads396775 14 37 G reads133285 14 38 G reads149531 14 40 G reads783410 14 40 G reads589447 15 26 G reads479627 15 40 G reads487568 15 40 G reads151315 15 40 G reads417769 15 40 G reads234968 16 40 G reads406764 16 40 G reads172977 16 40 G reads261598 16 40 G reads251973 16 40 G reads143068 16 40 G reads184489 16 40 G reads150991 16 40 G reads800825 16 27 G reads822648 16 37 G reads750251 17 40 G reads791634 17 40 G reads736696 17 40 G reads448928 17 40 G reads627572 17 40 C reads52724 18 40 G reads571753 18 40 G reads515126 18 40 G reads285861 18 38 G reads151792 18 40 G reads423523 18 40 G reads748188 18 40 G reads557023 19 31 G reads764188 19 40 G reads78092 19 34 G reads557277 19 40 G reads262659 19 40 G reads114057 19 40 G reads606249 20 40 G reads473714 20 40 G reads402125 20 40 G reads827215 20 40 G reads185055 21 40 T reads637980 21 40 G reads325140 21 40 G reads618240 21 38 G reads295986 21 40 G reads449722 22 40 G reads697989 22 40 G reads821941 23 40 G reads344860 23 40 G reads307442 23 38 G reads200016 23 39 G reads835634 23 40 G reads39776 23 40 G reads531436 24 40 G reads84395 24 40 G reads276696 24 40 G reads648646 25 40 G reads72097 25 40 G reads30470 28 40 G reads42168 32 27 G reads678090 32 40 G reads598381 33 40 G reads558073 33 40 G reads268394 4 40 G reads289285 3 40 G reads388667 3 40 G reads637581 3 31 G reads222692 3 40 G reads325225 3 40 G reads639547 3 40 G reads683033 2 40 G reads532484 2 40 G reads482962 2 40 G reads284027 2 40 G reads199155 2 40 G reads687484 2 40 G reads31003 2 40 G reads539488 1 40 G reads405709 1 40 G reads80656 1 40 G reads840777 1 40 G reads288092 1 40 G reads603731 1 40 chromsome:ref.fa Polymorphism Sites:437 NT Read_name Read_site quality score T reads790295 10 40 C reads288502 11 40 C reads558721 11 40 C reads618725 11 40 C reads676221 12 40 C reads200341 12 40 C reads107686 12 40 C reads671917 12 40 C reads729512 12 40 C reads60414 12 40 C reads788917 13 40 C reads76558 13 40 C reads672674 13 40 C reads81041 13 29 C reads593903 13 40 C reads223124 13 40 C reads43165 13 40 C reads178186 13 40 C reads452054 13 40 C reads829148 13 40 C reads466055 14 40 C reads566019 14 40 C reads117943 14 40 C reads199643 15 40 C reads655419 15 29 C reads759166 15 40 C reads401731 15 40 C reads289002 15 40 C reads625336 15 40 C reads481027 16 40 C reads559617 16 40 C reads801425 16 40 C reads376331 16 40 C reads276787 16 40 C reads514032 17 40 C reads629798 17 40 C reads706324 17 40 C reads103346 17 40 C reads444076 17 40 C reads184631 17 40 C reads162116 17 40 C reads358415 17 40 C reads283397 18 40 C reads691054 19 40 C reads551166 20 40 C reads429909 20 39 C reads226089 20 40 C reads620294 20 40 C reads243140 20 40 C reads423394 20 40 C reads759625 21 39 C reads598153 21 40 C reads461447 21 40 T reads140746 22 40 C reads394585 23 40 C reads109325 23 40 C reads794407 23 40 T reads758588 25 32 C reads744852 27 40 C reads782565 28 40 C reads169816 28 40 C reads596129 30 40 C reads775238 30 40 C reads441314 31 28 C reads550931 34 35 C reads813192 10 40 C reads660440 10 40 C reads264434 10 40 C reads140466 9 40 C reads267945 9 40 C reads652504 9 40 C reads326823 9 40 C reads243813 9 40 C reads761955 9 40 C reads17518 9 40 C reads442990 9 40 C reads634910 8 40 C reads371750 8 40 C reads686097 8 40 C reads673604 8 40 C reads560346 8 40 C reads126548 8 40 C reads594448 8 40 C reads696309 7 40 C reads574648 7 40 C reads747593 7 40 C reads780016 7 40 C reads789378 7 40 C reads13517 7 40 C reads546773 7 40 C reads48977 6 40 C reads656272 6 40 C reads66181 6 40 C reads670035 6 40 C reads484275 6 40 C reads532547 6 40 C reads214932 6 40 C reads755074 6 40 C reads233821 6 40 C reads599027 6 40 C reads439883 5 40 C reads11860 5 40 C reads74356 5 40 C reads228858 5 40 C reads599498 5 40 C reads836916 5 40 C reads377725 5 40 C reads28798 5 40 C reads515097 5 40 C reads625036 5 40 C reads835154 5 40 C reads691384 5 40 C reads586689 5 40 C reads629741 4 40 C reads220080 4 40 C reads106853 4 40 C reads364877 4 40 C reads66508 4 40 C reads640557 4 40 C reads843532 4 40 C reads141352 3 40 C reads256780 3 40 C reads618454 3 40 C reads619687 3 40 C reads575118 3 40 C reads1102 3 40 C reads565884 3 40 C reads197589 3 40 C reads662431 3 40 C reads510013 3 40 C reads537392 3 40 C reads139294 2 40 C reads598054 2 40 C reads584851 2 40 C reads498890 2 40 C reads172049 2 40 C reads790972 2 40 C reads240124 2 40 C reads657153 2 40 C reads393916 1 40 C reads45842 1 40 C reads745961 1 40 C reads849664 1 40 C reads223440 1 40 C reads271238 1 40 C reads640398 1 40 chromsome:ref.fa Polymorphism Sites:98767 NT Read_name Read_site quality score A reads117573 2 40 C reads346585 3 40 C reads545747 3 40 C reads843120 3 40 C reads778833 3 40 C reads780142 3 40 C reads340576 3 40 C reads114050 4 40 C reads404954 4 40 C reads652229 4 40 C reads807512 4 40 C reads301367 4 40 C reads92574 5 40 C reads155664 5 40 C reads544619 5 40 C reads446603 5 40 C reads43340 5 40 C reads355969 5 40 C reads639771 5 40 C reads541739 5 40 C reads632823 6 40 A reads360920 6 40 C reads310124 6 40 C reads303734 6 40 C reads538449 6 40 C reads302070 7 40 C reads822116 7 40 C reads839845 7 40 C reads836712 7 40 C reads503285 7 40 C reads342816 7 40 C reads584617 8 40 C reads422083 8 40 C reads114785 8 40 C reads161750 8 40 C reads216105 8 40 A reads250870 8 40 C reads774209 8 40 C reads756478 8 40 C reads211313 8 40 C reads392622 8 40 C reads378753 8 40 C reads662014 8 40 C reads192106 8 40 C reads817035 9 40 C reads489460 9 40 C reads310004 9 40 C reads263278 9 40 C reads362102 9 40 C reads605127 9 38 C reads117787 9 40 C reads378122 9 40 C reads11871 9 40 C reads774753 9 36 C reads519442 9 40 C reads550593 10 40 C reads359964 10 40 C reads557039 10 40 C reads129984 11 40 C reads759300 11 40 C reads380805 11 40 C reads112486 11 40 C reads173225 11 38 C reads730468 11 34 C reads671303 11 40 C reads489743 11 40 C reads560872 11 40 C reads307938 11 40 C reads426890 11 40 C reads137 11 40 C reads759174 11 27 C reads401654 12 40 C reads390019 12 39 C reads451891 12 40 C reads589923 13 37 C reads376327 13 30 C reads92756 13 40 C reads38741 13 40 C reads263519 14 40 A reads439084 14 40 C reads841962 14 40 C reads622392 14 25 C reads786981 15 36 C reads686285 15 40 C reads440175 15 40 C reads625590 15 40 C reads420832 15 40 C reads700234 16 40 C reads736242 16 37 C reads125659 16 40 C reads761768 16 27 A reads530787 16 40 C reads219098 16 40 C reads269692 16 40 C reads566660 16 40 C reads456560 17 38 C reads271084 17 40 C reads600445 17 40 C reads705250 18 40 C reads657093 18 40 C reads447836 18 40 C reads69408 19 40 C reads498290 19 40 A reads658611 20 40 C reads776279 21 40 C reads292050 21 36 C reads680819 21 40 C reads627958 21 40 C reads214720 22 40 A reads788660 23 39 C reads534437 23 40 A reads544546 25 40 C reads124439 25 40 C reads592874 27 40 C reads361139 27 40 C reads675997 27 40 C reads347393 27 40 C reads37078 27 40 C reads248763 30 26 C reads847803 31 40 C reads98541 31 40 C reads367890 35 26 C reads517116 2 40 C reads83498 2 40 C reads369739 2 40 C reads311895 2 33 C reads178724 2 40 C reads568541 2 40 C reads55260 2 40 C reads761765 1 40 C reads471801 1 40 C reads103811 1 40 C reads373911 1 40 C reads663180 1 40 C reads787122 1 40 C reads630749 1 40 C reads705396 1 40 C reads43639 1 40 chromsome:ref.fa Polymorphism Sites:98777 NT Read_name Read_site quality score C reads117646 1 40 A reads26016 1 40 A reads55539 1 40 C reads320009 1 40 A reads155886 1 40 C reads734122 1 40 C reads232533 1 40 A reads38551 1 40 C reads421315 2 40 C reads198762 2 40 A reads390947 2 40 C reads474802 2 40 C reads201179 2 40 A reads172140 2 40 C reads728181 3 40 C reads565536 3 40 A reads820071 3 40 A reads55234 3 40 C reads412554 3 40 C reads26554 3 40 A reads20359 4 40 C reads770679 4 40 A reads531794 4 40 C reads366082 4 40 A reads641244 4 40 A reads790905 4 40 C reads79565 4 40 C reads12378 5 40 C reads105869 5 40 A reads189522 5 40 A reads401393 5 40 A reads775336 5 40 A reads208783 5 40 C reads239789 5 40 C reads4135 5 40 C reads587151 5 40 C reads818977 6 40 A reads254721 6 40 A reads449178 6 40 C reads183345 6 40 A reads489206 6 40 A reads509588 6 40 C reads856490 6 40 A reads175149 6 40 A reads548539 6 40 A reads527067 6 40 A reads741308 6 40 C reads585250 6 40 A reads305386 6 40 A reads749468 6 40 C reads416301 6 40 A reads481437 7 40 C reads630093 7 40 C reads554859 7 40 A reads29366 7 40 C reads842122 7 40 C reads650562 7 40 C reads705705 8 40 A reads33769 8 40 A reads284766 8 40 C reads308415 8 40 C reads146935 8 40 C reads327055 8 40 A reads89244 8 40 C reads314203 8 40 A reads740707 8 40 A reads106258 8 40 C reads155439 8 40 A reads644680 8 40 A reads160474 8 40 C reads229969 8 40 A reads611176 8 40 C reads10208 9 40 C reads499539 9 40 C reads792806 9 40 C reads197920 9 40 A reads725317 9 40 C reads341803 9 40 C reads258568 9 40 C reads518918 9 40 A reads44595 9 40 C reads236664 9 40 C reads649784 9 40 C reads149679 9 40 C reads663249 10 40 C reads130371 10 40 C reads742535 10 40 C reads845873 10 40 A reads825413 10 40 A reads472879 10 40 A reads705396 11 40 C reads630749 11 40 C reads787122 11 40 A reads663180 11 38 C reads373911 11 40 A reads103811 11 40 A reads471801 11 32 C reads761765 11 35 A reads55260 12 40 A reads178724 12 40 C reads83498 12 40 A reads117573 12 40 C reads346585 13 40 A reads545747 13 40 A reads843120 13 40 A reads778833 13 40 A reads780142 13 32 C reads340576 13 40 C reads114050 14 40 C reads404954 14 40 A reads652229 14 40 C reads807512 14 40 A reads301367 14 40 C reads92574 15 35 C reads155664 15 40 C reads544619 15 40 C reads446603 15 40 A reads43340 15 40 C reads355969 15 40 A reads632823 16 40 C reads310124 16 40 C reads538449 16 35 C reads302070 17 40 C reads822116 17 40 C reads839845 17 40 C reads836712 17 40 A reads342816 17 40 C reads584617 18 40 C reads422083 18 40 C reads114785 18 40 A reads161750 18 40 A reads250870 18 40 C reads774209 18 40 C reads756478 18 40 A reads211313 18 40 C reads378753 18 40 C reads662014 18 40 A reads192106 18 40 C reads817035 19 26 A reads310004 19 28 C reads263278 19 28 C reads362102 19 40 C reads605127 19 40 C reads774753 19 40 A reads759300 21 40 A reads112486 21 40 C reads671303 21 40 C reads489743 21 40 C reads560872 21 40 A reads426890 21 40 C reads137 21 31 A reads759174 21 35 A reads401654 22 40 C reads390019 22 40 A reads451891 22 29 A reads263519 24 40 A reads439084 24 40 A reads841962 24 40 A reads530787 26 40 C reads769142 27 40 C reads184425 28 28 C reads69408 29 40 A reads498290 29 36 A reads658611 30 33 C reads793169 34 40 chromsome:ref.fa Polymorphism Sites:98780 NT Read_name Read_site quality score C reads624477 1 40 G reads599344 1 40 G reads690752 1 40 G reads167032 1 40 G reads946 1 40 G reads455623 1 40 G reads32385 1 40 G reads308124 1 40 G reads106736 2 40 G reads717593 2 40 G reads150768 2 40 G reads94728 2 40 G reads792660 2 40 G reads496899 2 40 G reads223267 2 40 G reads766241 2 40 G reads448440 2 40 G reads238598 2 40 G reads708099 3 40 G reads536138 3 40 G reads285036 3 40 G reads105123 3 40 G reads774332 3 40 G reads477429 3 40 G reads647339 3 40 G reads117646 4 40 C reads26016 4 40 C reads55539 4 40 G reads320009 4 40 G reads155886 4 40 G reads734122 4 40 G reads232533 4 40 G reads38551 4 40 G reads421315 5 40 G reads198762 5 40 G reads390947 5 40 G reads474802 5 40 G reads201179 5 40 G reads172140 5 40 G reads728181 6 40 G reads565536 6 40 G reads820071 6 40 G reads55234 6 40 G reads412554 6 40 G reads26554 6 40 C reads20359 7 40 G reads770679 7 40 C reads531794 7 40 G reads366082 7 40 G reads641244 7 40 C reads790905 7 40 G reads79565 7 40 G reads12378 8 40 G reads105869 8 40 G reads401393 8 40 G reads775336 8 40 G reads239789 8 40 G reads4135 8 40 G reads587151 8 40 G reads818977 9 40 C reads254721 9 40 C reads449178 9 40 G reads183345 9 40 C reads489206 9 40 G reads509588 9 40 G reads856490 9 40 C reads175149 9 40 C reads548539 9 31 C reads527067 9 40 G reads741308 9 40 G reads585250 9 40 C reads305386 9 40 G reads749468 9 40 G reads416301 9 40 G reads735403 10 40 G reads481437 10 40 G reads630093 10 36 G reads554859 10 40 G reads29366 10 40 G reads842122 10 40 G reads650562 10 40 G reads705705 11 40 C reads33769 11 40 G reads284766 11 40 G reads308415 11 40 G reads146935 11 40 G reads327055 11 40 G reads89244 11 40 C reads740707 11 40 G reads106258 11 40 G reads155439 11 40 G reads644680 11 40 G reads160474 11 40 G reads229969 11 40 G reads611176 11 40 G reads10208 12 40 G reads499539 12 40 G reads792806 12 40 G reads197920 12 40 C reads725317 12 40 G reads341803 12 40 G reads258568 12 40 G reads518918 12 40 G reads44595 12 40 G reads236664 12 40 G reads649784 12 40 G reads149679 12 40 G reads663249 13 40 G reads130371 13 40 G reads742535 13 40 G reads845873 13 40 G reads825413 13 40 C reads472879 13 40 G reads630749 14 40 G reads787122 14 40 G reads373911 14 40 G reads103811 14 40 G reads761765 14 40 G reads55260 15 40 G reads83498 15 40 C reads117573 15 34 G reads346585 16 36 G reads545747 16 40 G reads843120 16 40 G reads778833 16 40 G reads780142 16 33 G reads340576 16 40 G reads404954 17 40 G reads652229 17 40 G reads807512 17 40 G reads301367 17 40 G reads92574 18 37 G reads155664 18 40 G reads544619 18 30 G reads446603 18 40 G reads43340 18 40 G reads538449 19 40 G reads302070 20 30 G reads822116 20 40 G reads839845 20 40 G reads342816 20 40 G reads584617 21 40 G reads422083 21 29 G reads161750 21 40 C reads250870 21 40 G reads774209 21 40 G reads756478 21 40 G reads378753 21 40 G reads662014 21 40 G reads192106 21 40 G reads817035 22 40 G reads263278 22 40 G reads117787 22 39 G reads774753 22 40 G reads671303 24 40 G reads560872 24 40 G reads426890 24 40 G reads137 24 40 G reads401654 25 37 G reads390019 25 33 G reads841962 27 40 C reads530787 29 40 G reads769142 30 40 G reads184425 31 40 G reads69408 32 40 C reads658611 33 40 chromsome:ref.fa Polymorphism Sites:98786 NT Read_name Read_site quality score A reads354597 5 40 T reads396100 5 40 T reads669386 5 40 T reads172814 6 40 T reads399378 6 31 T reads780366 6 40 T reads789432 6 40 A reads412340 6 40 T reads48170 6 40 T reads478141 6 40 T reads742439 6 40 T reads22885 6 40 T reads449798 6 40 T reads624477 7 40 T reads599344 7 40 T reads690752 7 40 T reads167032 7 40 T reads946 7 39 T reads455623 7 40 T reads32385 7 40 T reads308124 7 40 T reads106736 8 38 T reads717593 8 40 T reads150768 8 40 T reads94728 8 40 T reads792660 8 40 T reads496899 8 40 T reads223267 8 40 T reads766241 8 40 T reads448440 8 40 T reads238598 8 40 T reads708099 9 40 T reads536138 9 40 T reads285036 9 40 T reads105123 9 40 T reads774332 9 40 T reads477429 9 40 T reads647339 9 40 T reads26016 10 40 T reads55539 10 40 T reads320009 10 40 T reads155886 10 40 T reads734122 10 40 T reads232533 10 40 T reads38551 10 40 T reads421315 11 40 T reads198762 11 40 T reads474802 11 40 T reads201179 11 40 T reads172140 11 38 T reads728181 12 40 T reads565536 12 40 T reads820071 12 40 T reads55234 12 40 T reads412554 12 40 T reads26554 12 40 T reads20359 13 40 T reads531794 13 40 T reads366082 13 40 T reads790905 13 40 T reads79565 13 40 T reads12378 14 40 T reads105869 14 40 T reads401393 14 40 T reads775336 14 40 T reads239789 14 40 T reads4135 14 34 T reads818977 15 40 T reads254721 15 40 T reads183345 15 40 T reads489206 15 40 A reads509588 15 37 T reads856490 15 40 T reads527067 15 40 T reads741308 15 30 T reads585250 15 31 T reads305386 15 40 T reads749468 15 40 A reads481437 16 28 T reads630093 16 40 T reads554859 16 40 T reads29366 16 40 T reads650562 16 40 T reads33769 17 40 T reads308415 17 40 T reads327055 17 40 T reads89244 17 40 T reads740707 17 28 T reads155439 17 40 T reads160474 17 40 T reads611176 17 40 T reads10208 18 40 T reads792806 18 40 T reads197920 18 40 T reads341803 18 40 T reads258568 18 40 T reads518918 18 32 T reads649784 18 40 T reads149679 18 40 T reads663249 19 40 T reads130371 19 39 T reads845873 19 40 T reads825413 19 40 T reads472879 19 40 T reads43639 20 40 T reads630749 20 40 T reads373911 20 26 T reads103811 20 40 T reads761765 20 40 T reads55260 21 40 T reads369739 21 40 T reads83498 21 40 T reads517116 21 40 T reads346585 22 40 T reads545747 22 40 T reads843120 22 40 T reads778833 22 40 T reads340576 22 36 T reads404954 23 40 T reads652229 23 40 T reads807512 23 40 T reads155664 24 40 T reads544619 24 33 T reads355969 24 40 T reads541739 24 40 T reads632823 25 31 T reads303734 25 40 T reads839845 26 26 T reads503285 26 40 T reads342816 26 40 T reads774209 27 40 T reads378753 27 39 T reads817035 28 27 T reads117787 28 28 T reads426890 30 40 T reads841962 33 40 T reads517168 33 32 T reads686285 34 40 T reads625590 34 36 T reads125659 35 31 T reads530787 35 40 T reads612075 5 40 T reads539939 5 40 T reads317504 5 40 T reads546605 5 32 T reads731844 5 40 T reads409251 4 40 T reads402152 4 40 T reads71180 4 40 T reads806466 4 37 T reads278763 4 40 T reads254039 4 40 T reads428421 4 40 T reads455828 4 40 T reads638105 4 40 T reads298766 4 40 T reads202454 3 40 T reads218203 3 40 T reads710515 3 40 T reads393745 3 40 T reads743485 3 40 T reads639019 3 40 T reads595368 3 40 T reads805447 2 40 T reads468643 2 40 T reads36592 1 38 T reads3967 1 40 T reads16474 1 40 T reads164580 1 40 T reads148051 1 40 T reads234964 1 40 T reads712501 1 40 T reads791649 1 40 T reads38468 1 40 chromsome:ref.fa Polymorphism Sites:98813 NT Read_name Read_site quality score T reads593080 1 40 G reads461788 1 40 G reads807497 1 40 T reads646246 1 40 T reads567591 1 40 T reads767585 1 40 T reads84477 1 40 G reads17929 1 40 G reads477119 1 40 G reads296171 2 40 T reads248108 2 40 T reads351137 2 40 T reads269332 2 40 T reads636567 2 40 G reads736673 2 40 T reads38485 2 40 T reads394740 3 40 T reads592697 3 40 T reads202006 4 40 G reads837023 4 40 G reads800806 4 40 T reads36771 4 40 G reads346027 4 40 T reads595496 4 40 T reads59134 5 40 G reads571529 5 40 T reads757488 5 40 T reads401179 5 40 T reads476150 5 40 T reads611810 5 40 G reads479444 6 40 T reads669662 6 40 G reads702790 6 40 T reads537216 6 40 G reads298600 6 40 G reads538519 6 40 T reads398418 6 40 G reads231671 7 40 T reads667858 7 40 G reads246287 7 40 T reads131710 8 40 G reads370260 8 40 T reads320138 8 40 T reads821008 8 40 T reads207245 8 40 T reads353516 8 40 T reads696313 8 40 G reads468387 8 40 T reads733812 9 40 T reads745491 9 40 T reads329600 9 40 T reads613391 9 40 T reads855391 9 40 T reads54212 9 40 T reads218334 10 40 T reads321612 10 40 T reads765651 10 40 T reads46338 10 40 T reads827137 10 40 T reads787657 10 40 G reads674255 11 40 G reads453816 11 40 T reads344541 11 40 T reads586396 11 36 T reads305179 11 40 T reads674070 11 40 T reads132915 12 34 G reads831795 12 40 G reads574821 12 40 G reads557664 12 40 T reads836710 12 40 T reads743084 13 40 T reads614848 13 40 T reads822422 13 40 T reads343587 13 40 T reads459144 13 40 T reads164065 13 40 T reads799424 13 40 G reads466250 14 40 G reads663845 14 40 T reads845716 14 40 T reads852991 14 40 G reads356639 14 40 G reads280319 15 39 T reads72011 15 40 G reads780672 15 40 G reads409537 15 40 T reads787098 15 40 T reads583880 16 32 G reads330723 16 40 T reads29182 16 40 T reads312772 16 40 T reads112343 16 38 G reads405451 16 40 T reads597584 17 33 G reads67091 17 40 G reads202408 17 40 T reads541636 17 40 T reads479439 17 40 T reads447456 17 40 G reads57817 18 40 G reads213567 18 40 T reads397773 19 40 G reads514411 19 40 T reads333196 19 40 G reads79086 19 40 G reads118813 20 40 G reads251884 20 40 T reads431918 20 27 T reads3166 21 40 T reads456208 21 40 T reads138207 21 40 G reads708309 21 40 T reads186218 21 40 T reads311551 21 40 G reads831680 22 39 T reads315583 22 40 T reads175487 23 40 G reads583285 23 40 G reads271398 23 40 G reads188292 24 40 T reads532495 25 40 T reads529564 26 40 T reads541755 27 40 T reads38468 28 40 T reads712501 28 40 G reads234964 28 40 G reads278763 31 40 G reads599344 34 40 T reads717593 35 40 T reads150768 35 40 chromsome:ref.fa Polymorphism Sites:98993 NT Read_name Read_site quality score T reads434427 1 40 A reads165437 2 40 A reads581555 2 40 A reads686999 2 40 A reads374294 2 40 A reads75980 2 40 A reads42445 2 40 A reads165844 2 40 A reads827323 2 40 A reads501922 2 40 A reads679584 3 40 A reads796850 3 40 A reads758866 3 40 A reads684759 3 40 A reads6487 3 40 A reads264989 3 40 A reads96613 3 40 A reads118736 3 40 A reads851821 3 40 A reads328844 3 40 A reads240862 4 40 A reads625709 4 40 A reads571877 4 40 A reads135826 4 40 A reads453146 4 40 A reads505852 4 38 A reads154423 5 40 A reads589668 5 40 A reads366836 5 40 A reads413922 5 40 A reads129111 5 40 A reads411209 5 40 A reads688041 5 40 A reads327201 6 40 A reads157309 6 40 A reads551222 6 40 A reads311513 6 40 A reads294622 6 40 A reads45336 6 40 A reads539589 6 40 A reads329526 6 40 T reads31023 6 40 A reads408143 6 40 A reads63854 7 40 A reads394802 7 40 T reads466317 7 40 A reads817081 7 40 A reads740703 7 40 A reads413544 8 40 A reads129714 8 40 T reads852511 8 40 A reads437241 8 40 A reads427911 8 40 A reads174575 8 40 A reads206599 8 40 A reads87870 8 40 A reads395991 8 40 T reads531183 8 40 A reads367447 8 40 A reads102684 9 40 T reads373429 9 38 A reads29029 9 40 A reads273104 9 40 A reads730288 9 40 A reads686836 9 40 A reads441022 10 40 A reads266727 10 40 A reads347181 10 40 A reads492917 10 40 T reads67846 10 28 A reads808295 10 40 A reads45948 10 40 A reads1603 10 40 T reads489340 10 40 A reads284795 10 37 A reads853019 10 30 A reads224612 11 40 A reads805976 11 39 A reads792221 11 40 T reads566129 11 40 A reads724934 11 40 A reads537401 11 40 T reads90409 11 40 T reads360773 12 40 A reads586067 12 40 A reads228361 12 40 A reads775792 12 38 A reads568279 13 40 T reads420403 13 40 A reads57473 13 40 T reads182751 13 40 A reads6459 13 40 A reads631597 14 40 T reads606057 14 40 A reads285963 14 40 A reads842206 15 40 A reads850323 15 40 A reads137068 15 40 A reads418033 15 26 A reads845450 15 40 A reads673987 15 40 A reads367382 15 40 A reads854167 16 40 A reads827957 16 31 A reads184632 16 40 A reads679276 17 33 A reads120402 17 31 T reads313230 17 40 A reads778107 17 37 A reads152433 17 40 A reads332460 17 40 A reads619005 18 40 T reads497415 18 40 A reads231346 18 40 A reads450827 19 40 A reads247358 19 29 A reads141094 19 30 A reads663939 19 40 A reads346087 20 40 A reads83779 20 40 A reads602031 20 40 A reads177891 21 27 A reads452666 21 40 T reads597305 21 34 A reads834045 22 40 T reads581854 22 37 A reads120706 22 40 T reads643756 22 40 T reads165719 22 40 A reads580465 23 40 A reads108143 24 40 A reads718729 25 37 A reads2710 25 40 A reads584339 25 40 A reads446269 25 40 A reads441706 25 36 A reads690628 26 32 A reads738913 28 40 A reads115389 28 40 A reads596938 30 37 T reads4691 30 33 T reads755998 31 27 A reads631350 33 26 A reads182989 34 40 A reads642230 34 40 A reads302454 35 28 A reads136670 1 40 A reads644543 1 40 A reads511344 1 40 A reads600741 1 40 A reads606470 1 40 A reads593705 1 40 chromsome:ref.fa Polymorphism Sites:707 NT Read_name Read_site quality score T reads592442 1 40 G reads413273 1 40 G reads829155 2 40 G reads472830 2 40 G reads705897 2 40 G reads422208 2 40 G reads757784 2 40 G reads195757 2 40 G reads733706 2 40 G reads521392 2 40 G reads89218 3 40 G reads553708 3 40 G reads724321 3 40 G reads336514 3 40 G reads436029 3 40 G reads287841 3 40 G reads710846 4 40 G reads706417 4 40 G reads765426 4 40 G reads542428 4 40 G reads466595 4 40 G reads32598 4 40 G reads591107 4 40 G reads547547 4 40 G reads74890 4 40 G reads33758 5 40 G reads388287 5 40 T reads546590 5 40 G reads559779 5 40 G reads57605 5 40 G reads515047 5 40 G reads70870 5 40 G reads27824 5 40 G reads521888 5 40 G reads584321 5 40 G reads395346 5 40 G reads318870 5 40 G reads271028 6 40 T reads838887 6 40 G reads3351 6 40 G reads9052 6 40 G reads720074 6 40 G reads648105 6 40 G reads395375 6 40 G reads731370 6 40 T reads770933 6 40 G reads431992 6 40 G reads127970 6 40 T reads478660 6 40 G reads44556 7 40 G reads570424 7 40 G reads497942 7 40 G reads372536 7 40 G reads389542 7 40 G reads324827 8 40 G reads498149 8 40 G reads683910 8 40 G reads319295 8 40 G reads236960 9 31 T reads788180 9 40 G reads26606 9 40 G reads681525 9 40 G reads425738 9 40 G reads329350 9 40 G reads33249 9 40 G reads335353 9 40 G reads717931 9 40 G reads413683 10 40 G reads671359 10 40 G reads489953 10 40 G reads213977 10 40 G reads103712 10 40 G reads20355 10 40 G reads585930 10 40 G reads48983 10 40 G reads523150 10 40 G reads705493 10 31 T reads74867 10 40 G reads148150 10 40 G reads159592 10 39 G reads354927 11 40 G reads100277 11 40 G reads197359 11 30 T reads157540 11 40 G reads280034 11 40 G reads768352 12 40 G reads371802 12 40 T reads95008 12 37 G reads689015 12 40 T reads813830 12 40 G reads48367 12 40 T reads388762 13 40 G reads416984 13 40 G reads346962 13 40 G reads234223 13 34 G reads718560 14 40 G reads80700 14 25 G reads546658 14 40 G reads273193 15 40 G reads584100 15 40 G reads603406 16 40 T reads484882 16 40 G reads641413 16 40 G reads25179 18 40 G reads10939 18 40 G reads73293 18 40 G reads182851 18 40 G reads452106 19 40 G reads436455 19 40 G reads230773 19 33 G reads368965 19 40 G reads678823 20 40 G reads269975 20 40 G reads93206 20 39 G reads516255 20 40 G reads71429 20 40 G reads680049 20 40 G reads10397 21 40 G reads250423 21 40 T reads534921 21 40 G reads642776 21 40 G reads3756 21 40 G reads747236 23 27 G reads83428 23 40 T reads377660 23 40 G reads121803 23 34 G reads35651 24 40 G reads387965 24 40 T reads223381 24 35 G reads427453 24 40 G reads507541 27 33 G reads403513 27 28 T reads322670 28 40 G reads424571 28 40 G reads791656 28 29 G reads313020 29 40 G reads566332 30 40 G reads509092 31 40 G reads159304 32 26 T reads465707 32 40 T reads106981 33 34 G reads41212 33 40 G reads239470 35 32 G reads267080 35 28 G reads304082 1 40 G reads783824 1 40 chromsome:ref.fa Polymorphism Sites:748 NT Read_name Read_site quality score T reads14181 1 40 G reads69769 1 40 T reads472774 1 36 T reads600048 1 40 G reads282477 1 40 T reads300837 1 40 G reads417885 1 40 G reads575500 2 40 T reads688494 2 40 T reads420898 2 40 G reads146440 2 40 T reads200952 2 40 G reads557700 2 40 T reads353943 2 40 T reads834033 3 40 G reads811315 3 40 G reads423339 3 37 G reads280589 3 40 G reads842800 3 40 T reads394143 3 40 G reads642925 3 40 G reads809966 4 40 G reads796507 4 40 G reads85998 4 40 G reads343458 4 40 G reads7877 4 40 G reads344633 4 40 G reads212070 4 40 G reads13477 5 32 G reads26448 5 40 T reads371319 5 40 T reads817051 5 40 T reads434119 5 40 T reads269822 5 40 T reads255590 5 40 G reads143424 5 40 T reads692899 5 40 T reads183364 5 40 G reads422506 6 40 T reads371179 6 40 G reads199263 6 40 T reads189547 6 40 T reads508142 6 40 T reads441551 6 40 G reads485912 7 40 T reads285939 7 40 G reads291441 7 40 G reads739212 7 40 G reads571885 7 40 G reads51039 7 40 G reads125615 7 40 T reads339578 7 40 G reads623743 7 38 G reads564800 7 40 T reads352395 8 40 G reads204693 8 40 T reads550378 8 40 G reads197840 8 40 T reads661613 8 40 G reads561848 8 40 T reads295702 8 40 G reads730097 8 40 G reads470598 8 40 G reads590092 8 40 T reads301258 8 40 T reads764241 9 40 G reads623366 9 40 T reads94190 9 40 T reads243566 10 40 G reads45148 10 40 G reads541707 10 40 G reads232466 10 40 G reads528459 10 39 T reads481849 10 40 G reads94391 10 40 G reads31421 10 40 G reads714056 10 40 T reads766691 10 26 T reads261423 10 40 G reads47337 11 40 T reads151301 11 40 G reads575447 11 40 T reads690989 12 40 G reads401929 12 31 G reads823844 12 40 T reads630755 12 40 T reads437081 12 34 G reads404343 12 40 T reads826230 12 40 G reads607600 13 40 T reads186895 13 40 G reads494652 13 29 T reads307639 13 40 G reads277737 13 37 G reads176290 14 40 T reads469734 14 40 T reads565387 14 40 T reads649205 14 40 T reads478748 14 35 T reads313346 15 40 T reads425516 15 38 T reads320820 15 40 T reads677832 15 40 G reads19346 16 40 G reads137189 16 40 G reads386551 17 28 T reads377792 17 40 G reads246842 17 40 T reads748185 18 40 G reads71690 18 40 T reads829441 18 40 T reads127967 18 40 G reads471362 18 40 T reads341345 19 40 T reads774807 19 40 T reads768583 19 33 G reads723502 20 33 T reads598059 20 40 G reads108753 20 40 G reads709429 20 39 T reads107148 20 40 T reads739313 21 28 G reads52776 21 40 T reads134760 21 40 G reads296751 21 40 G reads52103 21 40 T reads777247 21 40 T reads546684 22 40 G reads305537 22 40 G reads346907 22 27 T reads410946 22 40 G reads559243 23 40 T reads362061 23 40 T reads513338 24 39 G reads698231 24 40 T reads49190 24 40 G reads825194 24 32 G reads743893 25 40 T reads23049 25 40 T reads54902 25 30 T reads619802 27 30 T reads596485 27 40 T reads834094 27 25 T reads318174 28 35 T reads2236 29 40 T reads336946 29 40 T reads728661 35 40 G reads61531 1 40 G reads70367 1 40 chromsome:ref.fa Polymorphism Sites:755 NT Read_name Read_site quality score G reads259456 1 40 C reads762316 1 40 C reads156741 2 40 C reads409744 2 40 C reads45722 2 40 C reads679361 2 40 C reads331743 2 40 C reads588045 2 40 C reads741199 3 40 C reads128958 3 40 C reads290669 3 40 C reads102152 3 40 C reads117796 3 40 C reads611725 3 40 C reads658691 4 40 C reads847084 4 40 C reads6893 4 40 C reads492740 4 40 C reads392285 4 40 C reads121672 4 40 C reads637081 4 40 C reads453422 4 40 C reads850735 4 40 C reads639890 5 40 C reads766221 5 40 C reads707287 5 40 C reads426907 5 40 C reads262430 5 40 C reads331715 5 40 C reads156919 5 40 G reads806969 6 40 C reads164653 6 40 C reads659987 6 40 C reads421072 6 40 C reads764276 6 40 C reads810895 7 40 C reads327430 7 40 C reads609988 7 40 C reads579737 7 40 C reads75899 7 28 C reads102167 7 40 C reads239869 7 40 C reads50995 7 40 C reads792757 7 40 G reads732753 7 40 C reads70367 8 40 C reads61531 8 40 C reads14181 8 40 C reads69769 8 40 G reads472774 8 40 C reads600048 8 40 C reads282477 8 40 C reads300837 8 40 C reads417885 8 40 C reads575500 9 40 C reads688494 9 40 C reads420898 9 40 C reads146440 9 40 C reads200952 9 40 C reads557700 9 40 C reads353943 9 40 C reads834033 10 40 C reads811315 10 40 C reads423339 10 40 C reads280589 10 40 C reads842800 10 40 C reads394143 10 40 C reads642925 10 40 C reads809966 11 40 C reads796507 11 40 C reads85998 11 40 C reads343458 11 40 C reads7877 11 40 C reads344633 11 34 C reads212070 11 40 C reads13477 12 40 C reads26448 12 40 C reads817051 12 40 C reads434119 12 40 C reads269822 12 40 G reads255590 12 40 C reads143424 12 40 C reads692899 12 40 C reads199263 13 40 C reads441551 13 40 G reads285939 14 40 C reads739212 14 40 C reads571885 14 40 C reads51039 14 40 C reads125615 14 40 C reads339578 14 40 C reads564800 14 40 C reads352395 15 40 C reads204693 15 40 C reads550378 15 40 G reads661613 15 40 C reads295702 15 40 C reads730097 15 40 C reads470598 15 40 C reads590092 15 40 C reads301258 15 40 C reads94190 16 40 C reads243566 17 40 C reads45148 17 40 C reads232466 17 40 C reads528459 17 40 C reads481849 17 40 C reads31421 17 40 C reads766691 17 39 C reads261423 17 40 C reads47337 18 40 C reads151301 18 40 C reads575447 18 40 C reads823844 19 40 C reads630755 19 40 C reads799348 19 25 G reads826230 19 40 C reads186895 20 40 C reads494652 20 38 C reads307639 20 40 C reads197496 21 40 G reads516880 21 40 C reads565387 21 40 C reads649205 21 40 C reads425516 22 40 C reads677832 22 40 C reads685946 23 40 C reads386551 24 40 C reads377792 24 40 C reads246842 24 40 C reads748185 25 40 G reads676473 25 40 C reads133086 25 34 G reads341345 26 40 C reads723502 27 40 C reads598059 27 38 C reads108753 27 40 C reads709429 27 26 C reads269989 27 40 C reads346907 29 40 C reads825194 31 38 G reads23049 32 33 C reads54902 32 40 C reads834094 34 26 C reads222719 1 40 C reads552738 1 40 C reads141413 1 40 C reads434011 1 40 C reads790126 1 40 C reads531154 1 40 C reads553742 1 40 C reads16785 1 40 chromsome:ref.fa Polymorphism Sites:759 NT Read_name Read_site quality score A reads412225 1 40 C reads302954 1 40 A reads105003 1 40 C reads578402 1 40 C reads202061 1 40 C reads657434 1 40 C reads345041 1 40 C reads417180 1 40 C reads782064 2 40 C reads107324 2 40 C reads180111 2 40 C reads575651 2 31 C reads96236 2 40 C reads32293 2 40 C reads521281 2 40 A reads146042 3 40 C reads261605 3 40 C reads326991 3 30 C reads18523 3 40 A reads550983 3 40 A reads449703 4 40 C reads479200 4 34 C reads717095 4 40 C reads270104 4 40 C reads542697 4 40 A reads823602 4 40 C reads713190 4 40 C reads325170 4 40 A reads16785 5 40 C reads553742 5 40 A reads531154 5 40 C reads790126 5 40 C reads434011 5 40 A reads141413 5 40 C reads552738 5 40 C reads222719 5 40 C reads259456 5 40 A reads762316 5 40 C reads156741 6 40 C reads409744 6 40 A reads45722 6 40 A reads679361 6 40 C reads331743 6 40 C reads588045 6 40 C reads741199 7 40 C reads128958 7 40 C reads290669 7 40 C reads102152 7 40 C reads117796 7 40 C reads611725 7 38 C reads658691 8 40 C reads847084 8 40 C reads6893 8 40 C reads492740 8 40 C reads392285 8 40 A reads121672 8 40 C reads637081 8 40 C reads453422 8 40 C reads850735 8 40 C reads639890 9 40 C reads766221 9 40 C reads707287 9 40 C reads426907 9 40 A reads262430 9 40 A reads331715 9 40 C reads156919 9 40 C reads806969 10 40 C reads164653 10 40 C reads149490 10 40 A reads659987 10 40 A reads421072 10 37 A reads764276 10 40 C reads810895 11 40 C reads609988 11 40 A reads579737 11 40 C reads75899 11 31 C reads102167 11 40 C reads239869 11 40 A reads50995 11 40 A reads792757 11 40 C reads732753 11 40 C reads70367 12 40 A reads14181 12 40 C reads69769 12 40 C reads472774 12 40 A reads600048 12 40 C reads282477 12 40 A reads300837 12 40 C reads417885 12 40 C reads575500 13 40 C reads420898 13 40 C reads146440 13 40 C reads557700 13 40 A reads353943 13 40 A reads834033 14 40 C reads811315 14 40 C reads280589 14 40 A reads394143 14 40 C reads796507 15 40 C reads85998 15 40 C reads343458 15 40 C reads7877 15 40 C reads344633 15 40 C reads212070 15 40 C reads13477 16 28 C reads817051 16 40 A reads434119 16 40 A reads269822 16 40 C reads255590 16 40 C reads143424 16 40 A reads692899 16 40 C reads199263 17 40 A reads441551 17 32 C reads285939 18 40 C reads739212 18 33 C reads571885 18 38 C reads51039 18 40 C reads125615 18 40 C reads339578 18 40 A reads352395 19 40 C reads204693 19 40 A reads550378 19 40 C reads661613 19 40 A reads295702 19 40 C reads730097 19 40 C reads470598 19 33 A reads301258 19 40 C reads623366 20 37 C reads94190 20 39 C reads243566 21 40 C reads45148 21 27 C reads232466 21 40 C reads528459 21 40 A reads481849 21 26 C reads31421 21 40 A reads766691 21 40 C reads47337 22 26 A reads151301 22 40 C reads575447 22 39 C reads823844 23 40 A reads630755 23 27 C reads437081 23 40 C reads799348 23 40 C reads826230 23 40 C reads607600 24 40 C reads186895 24 40 C reads494652 24 36 A reads121869 24 40 C reads197496 25 26 A reads677832 26 30 C reads246842 28 40 C reads341345 30 40 C reads709429 31 35 C reads825194 35 25 C reads496586 1 40 C reads599967 1 40 chromsome:ref.fa Polymorphism Sites:99108 NT Read_name Read_site quality score C reads798443 1 40 C reads353129 1 40 C reads648144 1 40 A reads185140 1 40 A reads517635 1 40 A reads370303 1 40 C reads224165 1 40 C reads636404 2 40 A reads731767 2 40 C reads122351 2 40 A reads351632 2 40 A reads671210 2 40 A reads765284 2 40 C reads830530 3 40 C reads364054 3 40 C reads413389 3 40 C reads182719 3 40 A reads148375 3 40 A reads288617 3 40 C reads688765 3 40 A reads149012 4 40 C reads506718 4 40 A reads840110 4 40 C reads391058 4 40 A reads784836 4 40 A reads279646 4 40 A reads611125 4 40 A reads563527 5 40 C reads596083 5 40 C reads769514 5 40 C reads303230 5 40 A reads398943 5 40 A reads850869 5 40 C reads8115 5 40 C reads764361 5 40 C reads776017 5 40 A reads592851 5 40 A reads749844 6 40 C reads528076 6 40 C reads9095 6 40 A reads310372 6 40 A reads463162 7 40 C reads620075 7 40 C reads795181 7 40 A reads628428 7 40 C reads689125 7 40 A reads835409 7 40 A reads353832 7 40 A reads10828 8 40 C reads342105 8 40 C reads140914 8 40 C reads243257 8 40 A reads431572 8 40 A reads98529 8 40 C reads694752 8 40 C reads758248 8 40 C reads20455 9 40 C reads245465 9 40 C reads434808 9 40 C reads292517 9 40 C reads5655 9 40 C reads582945 10 40 A reads329685 10 40 C reads359590 10 40 C reads477061 10 40 C reads726698 10 40 C reads705152 10 40 C reads122627 11 40 C reads158670 11 40 C reads218890 11 40 A reads766244 12 40 C reads210747 12 40 A reads183043 12 28 C reads661909 13 40 A reads5354 13 40 C reads107765 13 40 C reads581547 13 40 A reads701420 14 40 A reads480876 14 40 A reads713380 14 40 C reads270060 14 40 A reads159033 15 36 A reads586884 15 40 A reads269400 15 40 C reads567120 15 40 C reads55710 15 40 A reads343122 16 40 A reads362143 16 39 C reads273916 17 40 A reads230463 17 40 A reads627701 17 40 A reads398149 17 40 A reads307108 18 40 C reads204965 18 40 A reads841359 18 40 C reads174907 18 40 C reads287306 19 40 C reads393074 19 26 A reads595016 19 40 A reads708885 19 40 C reads694502 20 40 A reads438561 20 40 C reads816974 21 40 C reads213061 21 40 C reads417472 21 32 C reads784905 22 40 C reads295108 23 40 C reads402969 23 25 A reads182517 23 40 C reads58239 23 40 A reads59705 23 40 A reads198166 23 40 C reads710106 25 40 C reads8096 25 40 C reads524316 25 40 C reads67086 26 40 C reads241831 27 38 C reads546693 27 34 A reads90307 27 40 C reads712460 27 40 C reads74124 28 40 A reads740418 33 40 A reads157123 34 33 A reads66104 35 40 A reads789061 1 40 chromsome:ref.fa Polymorphism Sites:825 NT Read_name Read_site quality score C reads5905 3 40 T reads81661 3 40 T reads590523 3 40 T reads436575 3 40 T reads513854 4 40 T reads42154 4 40 T reads416346 4 40 T reads355960 4 40 T reads626958 4 40 T reads809813 4 40 T reads790478 4 40 T reads660122 4 40 T reads699355 5 40 T reads167943 5 40 T reads724089 5 40 T reads573428 5 40 T reads557315 5 40 T reads90047 5 40 T reads568052 5 40 T reads689380 6 40 T reads201915 6 40 C reads605574 6 40 T reads385994 6 40 T reads538717 6 40 T reads487171 6 40 T reads703883 6 39 T reads808132 6 40 T reads477052 6 40 T reads703507 6 40 C reads789983 6 40 T reads434867 6 40 T reads156921 7 40 T reads615597 7 40 T reads344814 7 40 C reads28894 7 40 T reads224578 8 40 T reads90595 8 40 T reads22322 8 40 T reads191964 8 36 T reads636064 8 40 C reads694672 8 40 T reads195036 8 40 C reads542407 8 40 T reads588760 8 40 T reads177928 9 40 T reads475146 9 40 T reads375208 9 40 T reads414664 9 40 T reads509878 9 40 T reads523285 9 40 T reads603562 9 40 T reads226738 10 40 T reads776442 10 40 T reads58800 10 40 T reads28566 10 40 T reads729136 10 40 T reads151 10 40 T reads374600 10 40 T reads147161 10 40 C reads499679 10 40 T reads387109 10 40 T reads594064 10 32 T reads439211 10 40 T reads272399 11 40 T reads153626 11 40 T reads397471 11 40 T reads185590 12 40 T reads839287 12 28 T reads674873 12 40 T reads818049 12 29 T reads300024 13 40 T reads214286 13 33 T reads229706 14 40 T reads625456 14 40 T reads322350 14 40 T reads122257 14 40 T reads232251 14 40 T reads79401 15 40 T reads712283 15 40 T reads101392 15 36 T reads92397 15 40 T reads763671 16 40 T reads716821 16 40 T reads81499 16 40 T reads7064 16 40 T reads777113 16 40 T reads745282 16 40 T reads398503 16 40 T reads665906 17 40 T reads390586 17 40 T reads739422 18 40 T reads568077 18 40 T reads182725 18 40 T reads681216 19 34 T reads327526 19 30 T reads246156 19 39 T reads329839 19 40 T reads334123 19 40 T reads452319 19 40 T reads356325 20 40 T reads721450 20 40 T reads598881 20 40 T reads55612 21 40 T reads234430 21 40 T reads208574 22 40 T reads786810 22 40 T reads457894 22 40 T reads435179 22 25 T reads624757 23 40 T reads721434 23 40 T reads628372 23 40 T reads674904 24 40 T reads728570 24 40 T reads679039 25 40 T reads790202 26 40 T reads41935 26 40 T reads489421 26 34 T reads648506 26 31 T reads377961 27 40 T reads708097 27 40 T reads602205 28 39 T reads362082 28 36 T reads166582 29 40 T reads402288 30 37 T reads252198 34 40 T reads21504 3 40 T reads462721 2 40 T reads300822 2 40 T reads220122 2 40 T reads698093 2 40 T reads557642 2 40 T reads436717 2 40 T reads627659 2 40 T reads370622 2 40 T reads632909 2 40 T reads271304 1 40 T reads95200 1 40 T reads332373 1 40 T reads613647 1 40 T reads411958 1 40 chromsome:ref.fa Polymorphism Sites:99161 NT Read_name Read_site quality score C reads118961 1 40 T reads125264 1 40 T reads440159 1 40 T reads332282 1 40 C reads800090 1 40 C reads696323 1 40 T reads28406 1 40 C reads312708 1 40 T reads486642 1 40 T reads702140 1 40 C reads442063 1 40 T reads821194 1 40 T reads711441 2 40 C reads553198 2 40 C reads94047 2 40 C reads651040 2 40 T reads151484 3 40 C reads349473 3 40 C reads95871 3 40 C reads22230 3 40 C reads679934 3 40 C reads155723 4 40 C reads764180 4 40 C reads451760 4 40 T reads160475 4 40 C reads525597 4 40 T reads195338 4 40 T reads731204 4 40 C reads443205 4 40 C reads613300 4 40 C reads64913 5 40 C reads828777 5 40 T reads599226 5 40 C reads636482 5 40 T reads233568 5 40 C reads714058 5 40 T reads291480 6 40 C reads250471 6 40 C reads295705 6 40 T reads167038 7 40 C reads467643 7 40 T reads425979 7 40 C reads613010 7 40 C reads634335 7 40 C reads41852 7 40 T reads522033 7 40 T reads518199 7 40 C reads234139 8 40 T reads113932 8 40 T reads497189 8 40 T reads126375 8 40 C reads454789 8 40 T reads253693 9 40 T reads108877 9 40 C reads264138 9 40 C reads248787 9 40 C reads426339 9 40 T reads740992 9 40 C reads742867 9 40 C reads395836 9 40 T reads303957 10 40 C reads372543 10 40 T reads677419 10 40 C reads598030 10 40 C reads785711 10 40 C reads741176 10 40 T reads417808 11 40 C reads761129 11 40 T reads300631 11 40 T reads301823 11 40 C reads304972 11 40 T reads239435 11 40 C reads404703 11 40 T reads548431 11 40 C reads549549 11 40 C reads152479 11 40 C reads268296 11 40 C reads544048 12 40 T reads89034 12 40 C reads460216 12 40 C reads273682 12 40 C reads602941 12 40 C reads655464 12 40 T reads11046 12 40 C reads492311 12 40 T reads590982 12 40 C reads694865 12 40 T reads707496 12 40 C reads305088 12 40 T reads324902 13 40 C reads265255 13 40 T reads555994 13 40 T reads833261 13 40 C reads750373 13 40 T reads142091 13 40 C reads432363 14 40 T reads33488 14 40 C reads515886 14 40 T reads229529 14 40 C reads382785 14 40 T reads18636 14 40 C reads406840 14 40 C reads32241 15 40 T reads189613 15 40 T reads849369 15 40 T reads194350 15 40 T reads152058 16 40 T reads397858 16 40 C reads214918 16 35 C reads18322 16 40 C reads392292 16 40 C reads780235 16 40 C reads62938 16 40 C reads459276 17 38 C reads647494 17 40 C reads219820 17 39 C reads705743 18 40 T reads549952 18 40 C reads25091 18 40 C reads160538 18 40 C reads630231 19 40 C reads21846 19 40 C reads100645 19 40 T reads499777 19 40 C reads358666 19 40 C reads157701 19 40 C reads233274 20 37 C reads216541 20 40 C reads497817 21 40 C reads582174 21 40 C reads313058 21 40 T reads830248 21 40 C reads827974 22 40 C reads843641 22 40 C reads293667 22 40 C reads387756 23 40 C reads828334 23 40 T reads207270 23 30 C reads575699 23 40 C reads378119 23 40 C reads428708 25 27 T reads324334 25 37 C reads416373 26 40 C reads335239 26 40 C reads198128 27 40 T reads205764 28 34 T reads3721 28 40 T reads795517 28 32 C reads62834 32 27 C reads620483 34 33 chromsome:ref.fa Polymorphism Sites:870 NT Read_name Read_site quality score C reads725757 2 40 T reads248453 2 40 C reads376588 2 40 T reads516479 3 40 T reads289934 3 40 T reads716542 3 40 T reads149539 3 40 T reads120184 3 40 T reads213582 3 40 T reads231882 3 40 T reads359359 3 40 T reads126006 3 40 T reads466030 4 40 T reads295583 4 40 T reads366838 4 40 T reads129800 4 33 T reads421619 4 40 T reads165891 4 40 T reads803835 4 40 T reads762925 4 40 T reads358831 5 40 T reads387903 5 40 T reads728451 5 40 T reads824239 5 40 T reads532978 5 40 T reads266419 5 40 T reads656766 5 40 T reads411134 6 40 T reads147257 6 40 T reads841623 6 40 T reads412386 6 40 T reads624837 6 40 T reads493926 6 40 T reads798792 6 40 T reads518458 6 40 T reads710105 7 40 T reads38377 7 40 T reads814733 7 40 T reads717359 7 40 T reads176088 7 40 T reads677255 7 40 T reads283301 7 40 C reads68161 7 40 T reads844930 8 40 T reads796506 8 40 T reads58327 8 40 T reads676128 8 40 T reads425967 8 40 T reads571975 8 40 T reads582038 8 40 T reads496724 8 40 T reads696996 8 40 T reads244086 9 40 T reads713763 9 40 T reads790151 9 40 T reads191734 9 40 T reads760753 9 40 T reads82350 9 40 T reads318314 9 40 T reads748076 9 40 T reads110898 9 40 T reads416709 9 40 T reads836831 10 26 T reads122069 10 40 T reads740546 10 40 T reads240316 10 40 T reads415595 10 40 T reads225980 11 40 T reads215368 11 40 T reads67872 11 40 T reads153755 11 40 T reads371854 11 40 T reads376553 11 40 T reads162410 12 40 T reads67255 12 37 T reads250343 12 40 T reads745908 12 40 T reads481458 12 40 T reads211527 13 40 T reads297862 13 40 T reads154785 13 40 T reads136426 13 40 T reads362315 14 40 T reads289432 14 40 C reads752225 14 40 T reads215637 14 40 T reads374145 14 40 T reads233475 14 40 T reads343069 14 40 T reads755536 15 40 T reads520912 15 40 C reads758129 15 40 C reads163291 15 37 T reads414944 15 40 T reads498455 15 29 T reads798006 16 32 T reads484376 16 40 T reads475188 16 40 T reads3941 16 40 T reads546829 17 40 T reads71250 17 40 T reads561276 17 39 T reads445420 17 40 T reads3477 18 40 T reads570902 18 32 C reads709948 19 40 T reads782515 19 40 T reads409464 19 40 T reads59949 19 40 T reads275444 20 40 T reads707787 20 40 T reads246383 20 40 T reads370954 21 40 T reads400433 21 28 T reads744797 22 40 T reads157747 22 40 T reads729941 22 32 T reads660716 22 40 T reads591546 23 37 T reads509870 23 40 T reads586354 23 40 T reads552097 23 26 T reads655078 23 27 T reads245077 24 40 T reads252659 24 37 T reads219812 24 40 T reads250961 24 40 T reads320845 24 40 T reads281027 24 40 T reads424873 25 40 C reads99017 25 40 C reads7649 26 40 T reads38137 26 40 C reads289878 27 36 T reads190237 27 40 T reads516968 27 40 T reads416272 28 40 T reads423143 28 40 T reads105830 29 40 T reads831973 30 33 T reads465205 31 40 T reads150881 35 28 T reads24325 35 28 T reads571286 1 40 T reads178165 1 40 T reads461430 1 40 T reads771672 1 40 T reads258625 1 40 T reads666788 1 40 chromsome:ref.fa Polymorphism Sites:892 NT Read_name Read_site quality score T reads87692 2 40 A reads127791 2 40 A reads145185 3 40 A reads218780 3 40 T reads164973 4 40 T reads625441 4 40 A reads128941 4 40 A reads83570 4 40 T reads461161 5 40 T reads738142 5 40 T reads176866 5 40 T reads200947 5 40 A reads797566 5 40 T reads74078 6 30 T reads561816 6 40 T reads695103 6 40 A reads254127 6 40 A reads80087 6 40 T reads485064 6 40 T reads384348 6 40 T reads245116 7 40 T reads142104 7 40 A reads823716 7 40 T reads277286 7 40 T reads101901 7 40 A reads122470 7 40 A reads275646 7 40 T reads89204 7 40 A reads412447 8 40 A reads152194 8 40 A reads325396 9 40 A reads246134 9 40 T reads76283 9 40 A reads188704 9 40 T reads832530 9 40 T reads141412 9 39 T reads299428 9 40 T reads814076 10 40 T reads433582 10 40 T reads394723 10 40 A reads308324 10 40 A reads682257 10 40 T reads767991 10 40 T reads186824 10 40 T reads132960 10 40 T reads91254 10 40 T reads355531 10 40 A reads19281 10 40 A reads166230 10 40 A reads490662 10 40 A reads53636 11 40 A reads40992 11 40 A reads89670 11 40 T reads482156 11 40 T reads327192 11 40 T reads755845 11 35 T reads524651 12 40 T reads299603 12 40 A reads501219 12 40 T reads560647 13 40 A reads604275 13 40 T reads164116 13 40 T reads630713 13 40 A reads298007 13 40 A reads5507 13 33 A reads656761 14 40 T reads478129 14 40 A reads176396 14 40 T reads143594 14 40 T reads734041 14 40 T reads755823 14 40 T reads154760 14 40 T reads793984 15 40 T reads449958 15 40 A reads238867 15 40 A reads525629 15 40 T reads321611 16 39 T reads748691 16 40 A reads324690 16 40 A reads329174 16 40 T reads106285 16 40 A reads598703 17 40 T reads848021 17 36 T reads75446 17 40 A reads854359 17 40 A reads445442 17 40 T reads755049 17 31 T reads536972 18 33 T reads212577 18 40 T reads390655 18 40 T reads621854 18 40 A reads705880 18 40 A reads739291 19 40 T reads484246 19 40 A reads10277 19 40 T reads619531 19 40 A reads388248 19 40 T reads44888 19 40 A reads562375 20 40 A reads154823 21 40 T reads811747 21 25 T reads657703 21 40 T reads547880 22 40 T reads214382 22 40 A reads813088 22 39 A reads27413 22 40 A reads531243 22 40 T reads89093 22 40 A reads758984 22 40 T reads461430 23 40 A reads571286 23 40 T reads725757 24 40 A reads289934 25 26 T reads165891 26 40 T reads762925 26 40 T reads728451 27 33 T reads824239 27 40 T reads656766 27 30 T reads814733 29 39 T reads244086 31 40 T reads760753 31 40 A reads82350 31 40 T reads122069 32 40 A reads240316 32 40 A reads215368 33 40 A reads2057 2 40 A reads770929 1 40 A reads506008 1 40 chromsome:ref.fa Polymorphism Sites:921 NT Read_name Read_site quality score C reads782942 1 40 C reads393327 1 40 G reads784181 1 40 G reads272389 1 40 C reads507619 1 40 C reads300935 1 40 G reads219826 2 40 G reads796413 2 40 C reads288999 2 40 G reads582134 2 40 C reads593752 2 40 G reads205190 2 40 C reads84783 3 40 G reads450931 3 40 G reads556697 3 40 C reads854763 3 40 C reads751771 3 40 C reads85785 3 40 G reads203995 3 40 C reads211813 3 40 C reads157010 4 40 G reads16909 4 40 G reads202346 4 40 G reads471929 4 40 C reads422610 4 40 C reads285643 5 40 C reads50999 5 40 G reads591984 5 40 C reads154988 5 40 C reads811868 5 40 C reads342939 5 40 C reads361832 5 40 G reads342196 5 40 G reads111754 5 40 G reads534968 5 40 G reads367746 6 40 C reads649877 6 40 G reads505571 6 40 C reads700363 6 40 G reads528531 6 40 G reads599911 6 40 C reads468640 6 40 C reads165991 6 40 G reads716381 7 40 C reads479999 7 40 C reads116122 7 40 C reads845060 7 40 C reads527182 7 40 G reads127836 7 40 C reads357232 7 40 G reads85341 8 40 G reads435823 8 40 G reads141812 8 40 G reads763682 8 40 C reads353793 8 40 G reads220066 8 40 G reads347562 9 40 G reads457790 9 40 C reads823945 9 40 C reads322726 9 40 C reads618183 9 40 C reads62296 10 40 C reads382831 10 40 G reads376043 10 40 G reads710625 10 40 G reads401323 10 40 C reads813942 10 40 G reads447534 11 40 G reads381413 11 40 C reads432197 11 40 G reads281167 11 40 C reads410627 11 40 C reads707635 11 40 G reads760409 11 40 G reads60856 12 38 G reads202431 12 40 G reads138039 12 40 G reads301131 13 40 G reads72293 13 40 G reads470599 13 40 C reads380813 14 37 G reads604088 14 40 C reads728753 14 40 G reads580331 14 40 C reads626780 14 40 G reads465399 14 40 C reads822509 15 40 C reads524346 15 40 C reads511748 16 33 C reads22644 16 40 C reads99335 16 40 C reads200195 17 40 C reads638606 18 40 C reads374433 18 40 G reads284704 18 32 C reads60169 18 40 C reads509576 18 40 G reads14315 18 40 C reads533740 19 40 C reads587116 19 40 G reads166215 19 40 C reads306897 19 36 C reads147906 20 38 C reads780123 20 40 C reads683497 20 38 G reads189112 20 40 G reads461695 20 40 G reads584671 22 40 C reads160619 22 40 G reads408661 24 40 C reads601019 24 40 G reads335588 24 40 G reads582587 25 40 G reads649273 25 40 C reads584143 26 40 G reads488831 26 29 G reads464467 27 40 G reads354134 27 35 C reads609144 27 40 C reads233266 27 40 C reads625942 27 40 C reads446924 28 40 C reads114649 28 33 G reads662802 29 40 G reads809908 29 26 G reads145185 32 40 C reads485064 35 28 G reads240182 1 40 G reads95109 1 40 G reads196825 1 40 chromsome:ref.fa Polymorphism Sites:923 NT Read_name Read_site quality score C reads668870 1 40 T reads577635 1 40 C reads194450 1 40 C reads631857 1 40 T reads315085 1 40 C reads286126 1 40 T reads411589 2 40 C reads841776 2 40 C reads248095 2 40 C reads245310 2 40 C reads373427 2 40 T reads534349 2 40 C reads826404 2 40 C reads408037 2 40 T reads196825 3 40 T reads95109 3 40 T reads240182 3 40 C reads782942 3 40 C reads393327 3 40 T reads784181 3 40 T reads272389 3 40 C reads507619 3 40 C reads300935 3 40 C reads219826 4 40 C reads796413 4 40 C reads288999 4 40 T reads582134 4 40 C reads593752 4 40 T reads205190 4 40 C reads84783 5 40 T reads450931 5 40 T reads556697 5 40 T reads854763 5 40 C reads751771 5 40 C reads85785 5 40 T reads203995 5 40 C reads211813 5 40 C reads157010 6 40 T reads16909 6 40 T reads202346 6 40 C reads471929 6 40 C reads422610 6 40 C reads285643 7 40 C reads50999 7 40 T reads591984 7 40 C reads154988 7 40 C reads811868 7 40 C reads342939 7 40 C reads361832 7 40 T reads342196 7 40 T reads111754 7 40 T reads534968 7 40 T reads367746 8 40 C reads649877 8 40 T reads505571 8 40 C reads700363 8 40 T reads528531 8 40 T reads599911 8 40 C reads468640 8 40 C reads165991 8 40 T reads716381 9 40 C reads479999 9 40 C reads116122 9 40 C reads845060 9 40 C reads527182 9 40 T reads127836 9 40 C reads357232 9 40 T reads435823 10 40 T reads141812 10 40 T reads763682 10 40 C reads353793 10 40 T reads220066 10 40 T reads347562 11 40 T reads457790 11 40 C reads823945 11 40 C reads322726 11 40 C reads618183 11 40 C reads62296 12 40 C reads382831 12 25 T reads376043 12 40 T reads710625 12 40 T reads401323 12 40 C reads813942 12 40 T reads381413 13 40 C reads281167 13 40 C reads410627 13 40 C reads707635 13 31 T reads760409 13 40 T reads60856 14 36 T reads202431 14 40 T reads138039 14 40 T reads301131 15 40 T reads72293 15 40 C reads470599 15 40 C reads728753 16 40 C reads626780 16 40 T reads465399 16 40 C reads822509 17 40 C reads524346 17 40 C reads511748 18 29 C reads22644 18 40 T reads2958 19 40 C reads200195 19 40 C reads374433 20 33 C reads60169 20 40 C reads509576 20 40 T reads14315 20 40 C reads533740 21 40 T reads166215 21 40 C reads306897 21 25 C reads147906 22 40 T reads461695 22 40 T reads408661 26 40 C reads601019 26 40 T reads335588 26 40 T reads582587 27 40 T reads649273 27 39 T reads488831 28 35 T reads464467 29 40 T reads354134 29 40 C reads609144 29 29 C reads625942 29 40 C reads446924 30 40 T reads145185 34 29 chromsome:ref.fa Polymorphism Sites:99315 NT Read_name Read_site quality score T reads776309 1 40 T reads182389 1 40 C reads568116 1 40 C reads433983 1 40 T reads144802 2 40 T reads349539 2 40 C reads331838 2 40 T reads168236 2 40 T reads350691 2 40 T reads721113 2 40 T reads597445 2 40 C reads489000 2 40 C reads18562 3 40 T reads186060 3 40 T reads347519 4 40 T reads764101 4 40 T reads803397 4 40 T reads426546 4 40 C reads505179 4 40 T reads744754 4 40 C reads295840 4 40 T reads601639 4 40 C reads724722 4 40 C reads85699 4 40 C reads755090 4 40 C reads835423 4 40 T reads263546 5 40 C reads524394 5 40 T reads301560 5 40 T reads476092 5 40 T reads936 5 40 C reads138108 5 40 T reads82910 5 40 C reads329055 5 40 T reads808304 5 40 C reads319974 5 40 T reads416452 6 40 T reads124476 6 40 T reads777204 6 40 T reads760773 6 40 T reads567101 6 40 T reads388601 6 40 C reads399146 6 40 T reads235186 6 40 C reads587284 7 40 T reads62495 7 40 T reads174541 7 40 T reads384187 7 40 T reads607469 7 40 T reads370115 8 40 T reads166545 8 40 C reads530531 8 40 C reads469446 8 40 C reads328469 8 40 T reads687738 8 40 C reads2260 8 39 T reads509679 9 40 T reads824190 9 40 T reads509735 9 40 T reads827558 9 40 C reads285485 9 40 T reads291657 9 29 C reads346827 9 40 T reads573275 9 40 T reads751635 10 40 C reads698813 10 40 T reads340019 10 40 C reads200684 10 40 T reads468229 10 40 C reads351071 11 25 C reads747778 11 40 T reads694836 11 32 T reads23844 12 40 C reads526563 12 40 T reads699146 12 40 C reads782093 12 40 T reads411989 12 40 T reads645749 12 40 T reads533466 12 40 C reads793406 13 40 C reads752107 13 40 T reads697654 14 40 C reads354559 14 40 T reads494602 14 29 T reads14052 14 40 C reads369612 15 35 T reads743565 15 40 C reads408423 15 40 C reads807603 15 40 T reads275613 15 40 T reads2350 15 40 T reads506603 16 40 C reads272397 16 40 T reads413313 16 40 T reads353560 16 40 C reads824034 16 40 T reads635027 16 40 T reads751114 16 40 T reads845543 16 40 C reads142699 16 40 T reads586319 17 40 T reads727817 17 40 T reads265115 17 40 T reads74406 17 40 C reads329048 18 40 C reads198650 18 40 C reads510303 18 40 C reads771081 18 40 T reads637854 19 31 C reads290359 19 40 C reads614267 19 40 C reads418622 19 40 T reads743444 19 40 T reads708282 19 40 C reads302340 20 40 C reads831129 20 40 T reads678656 20 40 T reads602764 20 40 T reads60276 20 40 T reads767573 21 30 C reads106105 21 40 T reads316245 21 40 C reads830800 21 40 T reads443239 22 40 T reads100568 23 25 C reads286876 23 40 T reads777276 23 29 T reads704540 23 40 C reads86647 23 40 C reads844673 23 40 C reads43253 25 40 C reads512379 25 40 T reads268239 25 40 C reads258127 26 40 T reads826958 26 40 T reads445222 27 40 T reads231613 27 25 C reads102987 27 40 T reads655405 28 40 T reads341521 30 40 T reads692092 34 40 C reads759920 34 40 T reads576461 34 40 T reads251086 34 40 C reads298885 35 25 C reads69685 35 28 chromsome:ref.fa Polymorphism Sites:1009 NT Read_name Read_site quality score C reads330030 2 40 G reads143800 2 40 G reads239423 2 40 G reads504267 3 40 G reads741631 3 40 G reads82428 3 40 G reads133692 3 40 G reads449744 3 40 C reads824039 3 40 G reads212560 4 40 G reads479505 4 40 G reads555398 4 40 G reads296779 4 40 G reads712886 4 40 G reads246441 5 40 G reads164255 5 40 G reads675687 5 40 G reads159907 5 40 G reads699636 5 40 G reads649701 5 40 G reads68981 5 40 G reads335080 5 40 G reads269554 5 40 G reads687251 5 40 G reads405608 5 40 G reads434830 5 40 G reads476760 5 40 G reads567420 6 40 G reads368734 6 40 G reads300498 6 40 C reads266633 6 40 G reads154922 6 40 G reads158152 6 40 G reads780952 7 40 G reads508778 7 40 G reads102763 7 30 C reads367060 7 40 G reads56894 7 40 G reads651970 7 40 G reads844209 7 40 G reads78007 8 40 C reads762164 8 40 G reads408550 8 40 G reads118639 8 40 G reads532824 8 40 G reads437956 8 40 G reads758876 8 40 G reads138523 8 40 G reads765465 8 38 G reads99680 8 40 G reads702362 9 40 G reads757242 9 40 G reads339994 9 39 G reads763164 10 40 G reads272704 10 40 G reads324428 10 40 G reads745030 10 40 G reads719981 10 40 G reads80082 10 40 C reads593785 10 40 G reads154244 10 40 G reads125284 11 33 G reads616562 11 39 G reads558443 11 40 G reads283003 11 40 G reads36490 12 40 G reads106676 12 40 C reads338743 12 35 C reads825566 12 40 G reads393970 12 40 G reads116145 12 40 C reads831534 12 40 G reads226975 12 40 C reads283673 12 40 G reads386659 13 40 G reads148442 13 40 G reads217155 13 40 G reads164926 14 40 G reads226799 14 40 G reads477944 14 40 G reads357944 14 30 G reads436197 14 40 G reads203377 15 40 G reads382338 15 40 G reads578311 15 40 C reads405002 15 40 G reads800717 15 40 G reads388009 15 40 G reads635936 15 40 G reads321699 15 40 G reads579374 15 40 G reads739339 15 40 G reads617213 15 40 G reads849414 15 40 G reads750441 15 40 G reads385824 16 36 G reads515084 16 40 C reads816445 16 40 G reads652744 17 40 G reads268410 17 40 G reads596016 17 40 G reads445734 17 40 C reads63006 17 39 C reads253030 17 40 G reads97446 18 40 G reads664232 18 40 G reads146979 19 40 G reads254191 19 28 G reads232904 19 40 G reads608956 19 31 G reads8984 19 40 G reads267659 20 40 G reads315666 20 40 G reads166181 20 25 G reads491261 20 40 C reads449160 20 40 C reads86732 20 40 G reads854735 21 40 G reads843258 21 40 G reads760202 22 40 G reads700170 22 40 G reads23673 22 40 G reads565384 22 40 G reads577764 22 40 G reads740885 24 31 G reads842019 25 40 G reads12196 25 32 G reads801021 25 29 G reads540415 25 40 G reads184076 26 30 G reads505165 27 40 G reads485826 28 40 G reads215040 29 40 G reads327795 29 40 G reads773893 33 40 G reads316910 33 40 G reads823557 35 40 G reads498104 2 40 G reads445680 1 40 G reads248343 1 40 G reads163526 1 40 G reads574119 1 40 G reads676201 1 40 G reads276105 1 40 G reads687332 1 40 G reads813721 1 40 G reads131704 1 40 chromsome:ref.fa Polymorphism Sites:99332 NT Read_name Read_site quality score A reads509848 4 40 G reads299879 4 40 G reads355172 4 40 G reads630598 4 40 G reads154863 4 40 G reads759069 4 40 G reads206180 4 40 G reads723999 5 40 G reads266620 5 40 G reads30016 5 40 G reads807706 5 40 G reads469716 5 40 G reads489834 5 40 G reads795598 5 40 G reads205148 5 40 G reads192442 5 40 G reads568759 5 40 G reads641897 5 40 G reads418817 6 40 G reads109276 6 40 G reads234332 6 40 G reads827203 6 40 A reads856682 6 40 A reads809973 6 40 G reads461816 6 40 G reads622907 6 40 G reads776645 6 40 G reads138020 7 40 G reads66962 7 40 G reads586731 7 40 G reads766830 7 31 G reads744236 7 40 G reads426266 7 40 G reads495274 7 40 G reads326338 7 40 G reads504164 8 40 G reads243359 8 40 G reads546482 8 40 G reads693986 8 40 G reads219167 9 40 G reads78960 9 40 G reads37212 9 40 G reads366748 9 40 G reads13102 9 40 A reads221422 10 40 G reads376727 10 34 G reads809725 10 40 G reads475938 10 40 G reads469709 10 40 G reads656734 11 40 G reads377247 11 36 G reads240154 11 29 G reads659788 11 40 G reads238908 11 40 G reads40726 11 40 G reads630372 11 40 G reads412480 11 40 G reads255497 11 40 G reads503791 12 29 G reads600540 12 40 G reads767874 12 32 G reads370861 12 40 G reads255524 12 40 G reads493882 12 40 G reads593261 12 35 G reads456235 13 40 G reads170645 13 40 G reads14926 13 40 G reads233242 13 40 G reads88732 13 40 G reads507879 13 40 G reads4635 13 40 A reads9949 13 40 G reads271648 13 38 G reads608058 13 40 G reads555078 14 40 G reads191273 14 40 G reads460313 14 40 G reads497417 14 40 G reads172996 14 40 G reads52947 15 40 G reads319301 15 40 G reads366664 15 40 G reads282459 15 40 G reads784300 15 40 G reads145580 15 40 G reads181640 15 40 G reads105376 16 40 A reads351510 16 39 G reads381459 16 40 G reads242431 16 40 G reads374764 17 40 G reads491052 17 33 G reads389522 17 40 G reads62034 17 40 G reads182389 18 40 G reads568116 18 40 G reads144802 19 33 G reads350691 19 40 G reads347519 21 40 G reads505179 21 40 G reads295840 21 40 G reads724722 21 40 A reads755090 21 34 G reads476092 22 36 A reads329055 22 26 G reads319974 22 40 G reads416452 23 40 G reads124476 23 40 G reads567101 23 40 G reads235186 23 34 G reads607469 24 40 G reads530531 25 36 A reads328469 25 40 G reads751635 27 25 G reads782093 29 33 G reads697654 31 40 G reads275613 32 40 G reads751114 33 40 G reads727817 34 40 A reads198650 35 40 G reads297665 4 40 G reads171251 4 40 G reads376405 4 40 G reads286862 4 40 G reads292666 4 40 G reads779489 4 40 G reads503068 3 40 G reads259315 3 40 G reads66905 3 40 G reads240743 3 40 G reads265233 3 40 G reads257624 3 40 G reads131859 3 40 G reads450812 2 40 G reads560455 2 40 G reads736034 2 40 G reads615136 2 40 G reads825772 2 40 G reads42309 2 40 G reads16187 2 40 G reads492734 1 40 G reads507280 1 40 G reads801416 1 40 G reads23008 1 40 G reads839537 1 40 G reads204746 1 40 G reads34982 1 40 chromsome:ref.fa Polymorphism Sites:99341 NT Read_name Read_site quality score T reads35969 1 40 A reads598158 1 40 A reads252377 2 40 A reads498955 2 40 A reads324682 2 40 A reads187217 2 40 A reads596006 2 40 T reads428581 2 40 A reads399221 2 40 A reads288098 2 40 A reads809438 2 40 A reads328084 3 40 A reads694182 3 40 A reads456330 3 40 A reads591726 3 40 T reads126891 3 40 A reads839602 3 40 A reads342959 3 40 A reads125444 3 40 T reads178775 3 40 A reads260241 3 40 A reads574763 3 40 A reads778994 3 40 A reads612492 3 40 T reads87309 3 40 A reads380307 4 40 A reads484737 4 40 T reads577775 4 40 T reads175252 4 40 A reads354090 4 40 A reads137951 4 40 T reads556485 4 40 T reads333292 4 40 T reads108286 4 40 A reads759368 4 40 A reads37359 4 40 A reads639637 4 40 A reads232163 5 40 A reads798424 5 40 A reads86527 5 40 T reads639009 5 40 A reads482578 5 40 A reads170136 5 40 A reads310198 5 40 A reads64549 5 40 A reads563811 6 40 T reads596830 6 40 A reads2974 6 40 A reads159947 6 40 A reads160452 6 40 A reads280054 7 40 T reads839388 7 40 A reads340988 7 40 A reads660041 7 40 A reads25659 7 40 A reads369484 7 40 A reads674059 7 40 A reads612895 7 38 A reads508700 8 40 A reads724670 8 40 T reads70469 8 40 A reads566664 8 40 A reads257591 8 40 A reads496654 8 40 A reads365049 8 40 A reads458747 8 40 A reads617558 8 40 A reads553677 8 40 A reads164706 9 40 A reads706286 9 40 A reads609586 9 40 A reads787344 9 40 A reads590600 9 40 A reads477096 9 40 A reads34982 10 40 A reads204746 10 32 T reads839537 10 40 A reads23008 10 40 A reads801416 10 40 A reads507280 10 40 A reads492734 10 40 A reads16187 11 40 A reads42309 11 40 A reads736034 11 40 T reads450812 11 40 T reads131859 12 32 A reads257624 12 40 A reads265233 12 40 A reads240743 12 40 T reads66905 12 40 T reads259315 12 40 A reads779489 13 40 A reads286862 13 40 A reads376405 13 40 A reads171251 13 40 A reads297665 13 40 A reads299879 13 40 A reads630598 13 40 A reads759069 13 40 A reads206180 13 40 A reads723999 14 40 A reads30016 14 40 A reads807706 14 40 A reads469716 14 40 T reads489834 14 40 A reads205148 14 40 A reads192442 14 34 A reads568759 14 25 A reads641897 14 40 T reads234332 15 40 A reads827203 15 40 A reads809973 15 40 A reads461816 15 40 T reads622907 15 32 A reads138020 16 39 A reads66962 16 37 A reads586731 16 40 T reads438400 16 40 A reads504164 17 40 A reads78960 18 40 T reads37212 18 40 A reads13102 18 40 A reads469709 19 29 A reads659788 20 40 T reads238908 20 38 A reads630372 20 37 A reads255497 20 40 A reads370861 21 40 A reads255524 21 40 A reads493882 21 27 A reads503963 21 40 T reads456235 22 40 A reads170645 22 40 A reads233242 22 40 A reads88732 22 40 A reads271648 22 40 T reads608058 22 40 T reads348545 22 40 T reads497417 23 40 A reads172996 23 40 A reads52947 24 40 A reads319301 24 40 T reads784300 24 40 T reads181640 24 40 A reads351510 25 38 A reads381459 25 40 T reads242431 25 40 A reads389522 26 40 T reads597445 28 40 A reads744754 30 26 A reads476092 31 36 A reads567101 32 40 A reads328469 34 40 A reads491718 1 40 A reads275618 1 40 A reads371985 1 40 A reads537493 1 40 A reads766998 1 40 A reads761929 1 40 chromsome:ref.fa Polymorphism Sites:1030 NT Read_name Read_site quality score T reads282514 1 40 T reads379593 1 40 T reads438004 1 40 T reads444767 1 40 T reads626922 1 40 C reads555852 1 40 T reads532452 1 40 T reads546974 2 40 T reads789274 2 40 C reads840036 3 40 C reads129774 3 40 T reads108336 3 40 T reads684009 3 40 C reads578731 3 40 T reads792798 3 40 C reads785341 4 40 T reads274942 4 40 T reads462084 4 40 T reads73437 4 40 T reads649072 4 40 T reads761864 4 40 T reads808942 4 40 C reads287405 4 40 C reads848366 4 40 T reads387779 4 40 T reads407575 5 40 C reads616671 5 40 C reads157639 5 40 C reads495390 5 40 T reads774081 5 40 C reads129150 5 40 T reads422385 5 40 C reads427782 6 40 C reads818325 6 40 C reads629055 6 40 T reads196447 6 40 T reads561828 6 40 C reads372935 6 40 T reads222370 6 40 T reads498492 6 40 T reads625039 7 35 T reads29282 7 40 C reads356697 7 40 T reads172001 7 40 T reads665237 7 40 C reads407061 7 40 T reads549216 7 40 T reads487377 7 40 T reads273905 7 40 T reads291291 7 40 C reads392648 7 40 C reads671461 7 40 C reads701999 8 40 T reads765457 8 40 T reads255899 8 40 T reads377410 8 40 C reads396480 9 40 T reads42551 9 40 C reads446043 9 40 T reads501550 9 40 T reads389563 9 40 T reads824974 9 40 C reads663307 10 40 T reads516335 10 40 C reads632555 10 40 C reads74229 10 40 T reads276500 10 40 T reads84244 10 40 C reads651097 10 40 T reads242582 10 40 T reads490693 11 40 T reads37180 11 40 T reads556483 11 40 T reads386128 11 40 T reads725924 11 40 C reads270492 12 40 T reads632543 12 40 C reads208498 12 40 T reads344649 12 40 T reads636427 13 40 T reads367996 13 40 T reads475205 13 40 C reads160860 13 40 T reads450515 13 40 C reads742629 13 40 C reads819540 13 40 C reads341048 13 39 C reads787519 14 40 T reads720140 14 40 T reads553225 14 40 T reads19842 15 40 C reads374374 15 40 C reads530445 15 40 T reads812497 16 40 C reads608858 16 40 C reads304849 17 40 T reads779162 17 40 T reads333748 17 34 T reads510457 17 40 C reads20015 17 40 C reads205876 17 40 C reads546141 18 40 C reads292891 18 40 C reads659653 18 40 C reads206572 18 40 T reads32731 18 31 T reads422523 18 40 C reads209761 19 40 T reads737338 19 40 C reads740498 19 40 T reads80044 19 40 C reads379945 20 40 T reads749974 20 40 T reads597404 21 40 C reads276105 22 40 T reads330030 23 40 T reads143800 23 35 C reads239423 23 40 C reads741631 24 40 T reads82428 24 39 T reads449744 24 40 T reads212560 25 40 C reads479505 25 40 T reads296779 25 40 T reads164255 26 30 T reads675687 26 26 T reads405608 26 40 T reads266633 27 40 T reads844209 28 40 T reads532824 29 40 T reads757242 30 37 T reads338743 33 40 chromsome:ref.fa Polymorphism Sites:1031 NT Read_name Read_site quality score T reads196447 7 40 A reads561828 7 40 A reads372935 7 40 A reads222370 7 40 T reads498492 7 40 A reads625039 8 40 A reads29282 8 40 A reads356697 8 40 A reads172001 8 40 A reads665237 8 40 A reads407061 8 40 A reads549216 8 40 A reads487377 8 40 A reads273905 8 40 A reads291291 8 40 A reads392648 8 40 A reads671461 8 40 A reads701999 9 40 A reads765457 9 40 A reads255899 9 40 A reads377410 9 40 A reads396480 10 40 A reads42551 10 40 A reads446043 10 40 A reads501550 10 40 A reads389563 10 34 T reads824974 10 40 A reads663307 11 40 A reads516335 11 40 A reads632555 11 40 A reads74229 11 40 A reads276500 11 40 A reads84244 11 40 A reads651097 11 37 A reads242582 11 40 A reads490693 12 40 A reads37180 12 40 A reads556483 12 40 A reads386128 12 40 A reads270492 13 40 A reads632543 13 40 A reads208498 13 40 A reads344649 13 40 A reads636427 14 40 A reads367996 14 40 A reads475205 14 40 A reads160860 14 40 A reads450515 14 40 A reads742629 14 40 A reads819540 14 40 A reads341048 14 39 A reads787519 15 40 A reads720140 15 40 A reads553225 15 40 A reads19842 16 40 A reads374374 16 40 A reads530445 16 33 A reads812497 17 40 A reads608858 17 40 A reads779162 18 40 A reads510457 18 40 A reads20015 18 40 A reads205876 18 34 A reads546141 19 40 A reads292891 19 27 A reads659653 19 40 A reads206572 19 40 A reads209761 20 36 A reads737338 20 40 A reads740498 20 40 A reads80044 20 40 A reads379945 21 40 A reads749974 21 40 A reads415674 21 34 A reads597404 22 40 A reads248343 23 40 A reads330030 24 40 A reads239423 24 40 A reads741631 25 40 T reads82428 25 40 A reads449744 25 40 A reads212560 26 40 A reads479505 26 40 A reads246441 27 40 A reads675687 27 31 A reads405608 27 34 A reads266633 28 40 A reads532824 30 40 A reads757242 31 40 A reads338743 34 39 A reads148442 35 40 A reads629055 7 30 A reads818325 7 40 A reads427782 7 40 A reads422385 6 40 A reads129150 6 40 A reads774081 6 40 A reads495390 6 40 A reads157639 6 40 A reads616671 6 40 A reads407575 6 40 A reads387779 5 40 A reads848366 5 40 A reads287405 5 40 A reads808942 5 40 A reads761864 5 40 A reads649072 5 40 A reads73437 5 40 A reads462084 5 40 A reads274942 5 40 A reads785341 5 40 A reads792798 4 40 A reads578731 4 40 A reads684009 4 40 A reads108336 4 40 A reads129774 4 40 A reads840036 4 40 A reads789274 3 40 A reads546974 3 40 A reads532452 2 40 A reads555852 2 40 A reads626922 2 40 A reads444767 2 40 A reads438004 2 40 A reads379593 2 40 A reads282514 2 40 A reads784231 1 40 A reads49551 1 40 A reads748220 1 40 A reads176068 1 40 A reads669230 1 40 A reads525386 1 40 A reads328038 1 40 chromsome:ref.fa Polymorphism Sites:1053 NT Read_name Read_site quality score T reads607295 1 40 C reads240062 1 40 C reads300965 1 40 C reads303057 1 40 C reads798469 1 40 C reads56134 2 40 T reads389472 2 40 T reads24016 2 40 T reads170708 2 40 C reads493008 2 40 C reads420733 2 40 T reads210834 2 31 C reads739820 2 40 C reads128194 2 40 C reads670272 2 40 C reads68096 2 40 C reads849104 3 40 C reads261113 3 40 C reads554296 3 40 C reads31297 3 40 T reads714172 3 40 C reads618167 3 40 C reads565732 3 40 C reads300100 4 40 T reads229121 4 40 T reads29782 4 40 C reads538427 4 40 T reads653159 4 40 C reads522777 4 40 C reads497425 4 40 C reads22632 4 40 C reads217741 4 40 C reads205833 4 33 C reads616745 4 40 C reads787464 5 40 C reads9252 5 40 T reads182960 5 40 C reads370719 5 40 T reads482980 5 40 C reads105686 5 40 C reads253998 6 40 C reads513028 6 40 C reads177078 6 40 T reads715541 6 40 C reads317961 6 40 T reads16925 6 40 C reads812453 6 40 C reads444574 7 40 T reads618761 7 40 C reads327770 7 40 C reads165073 7 40 C reads206939 7 40 C reads812142 7 40 C reads250001 7 40 C reads183497 7 40 C reads299093 7 40 C reads386225 7 40 C reads470433 7 40 C reads335852 7 40 C reads172653 7 40 C reads581397 7 40 C reads584294 7 40 C reads485538 8 28 C reads413296 8 40 C reads483754 8 40 C reads208744 8 40 T reads582876 8 40 C reads683882 8 40 T reads52658 8 40 T reads855168 8 40 C reads592247 8 40 T reads445783 9 40 C reads480437 9 40 C reads284572 9 40 C reads829473 9 40 T reads705109 9 40 C reads820852 9 40 T reads479739 9 40 C reads75235 10 40 C reads154378 10 40 C reads550428 10 40 C reads256245 10 40 T reads200418 10 40 C reads500517 10 33 C reads216383 10 40 C reads804291 10 40 C reads521072 10 40 C reads834097 10 40 C reads514926 10 40 C reads120599 11 40 T reads277275 11 40 C reads741637 11 31 C reads645022 11 40 C reads398277 11 40 C reads55870 11 40 C reads440873 11 40 C reads66375 11 40 C reads366398 11 40 C reads138687 12 40 C reads312564 12 40 C reads460530 12 40 T reads737078 12 40 C reads332609 12 40 T reads160846 12 40 C reads551698 12 40 C reads311264 13 40 C reads13720 13 40 C reads391819 14 34 C reads305957 14 40 C reads789501 14 40 C reads84605 14 40 C reads335332 15 40 T reads773324 15 40 C reads762611 15 39 T reads24149 15 40 C reads595309 15 40 C reads792174 15 34 C reads645035 16 40 C reads143340 16 29 C reads259223 16 40 C reads354293 17 40 C reads627951 17 39 C reads7005 17 30 C reads220547 17 40 C reads418322 17 40 T reads652354 18 40 C reads821324 18 40 C reads229804 18 40 C reads1227 18 40 C reads99029 18 40 C reads56234 18 40 C reads531242 19 40 C reads91969 20 40 C reads21222 20 40 C reads207567 20 40 T reads798888 20 40 C reads812960 20 40 C reads181061 20 40 T reads53694 21 40 C reads76625 21 40 C reads248443 21 33 C reads206379 21 40 C reads388128 21 40 C reads162182 21 40 T reads167740 21 40 T reads16203 21 35 C reads774475 21 40 T reads240883 22 40 T reads289278 22 40 C reads840374 22 40 C reads192552 22 40 T reads328038 23 40 C reads525386 23 40 C reads669230 23 37 C reads176068 23 40 C reads282514 24 40 C reads532452 24 31 T reads546974 25 40 C reads684009 26 34 C reads578731 26 40 T reads792798 26 40 C reads287405 27 40 C reads665237 30 40 C reads549216 30 40 T reads42551 32 40 T reads84244 33 40 C reads651097 33 31 T reads490693 34 40 chromsome:ref.fa Polymorphism Sites:99424 NT Read_name Read_site quality score G reads232308 3 40 T reads754338 3 40 T reads274061 3 40 T reads34340 3 40 T reads335571 3 40 T reads120731 3 40 T reads280512 3 40 T reads84158 3 40 T reads194255 4 40 T reads144227 4 40 T reads786524 4 40 T reads353624 4 40 T reads43372 4 40 T reads730232 4 40 T reads776971 4 40 T reads653105 4 40 T reads499776 4 40 T reads790270 5 40 T reads528036 5 40 T reads77958 5 40 T reads761417 5 40 T reads551427 5 40 T reads260389 5 37 T reads49172 5 40 T reads239182 5 40 T reads45096 6 40 T reads240386 6 40 T reads777847 6 40 T reads254983 6 40 T reads594668 6 40 T reads120299 6 40 T reads835849 6 40 T reads569226 6 40 T reads296434 6 40 T reads228691 6 40 T reads500135 7 40 T reads650116 7 40 T reads798823 7 40 T reads813316 7 40 T reads269174 7 40 T reads103516 7 40 G reads530460 7 40 T reads303933 8 40 T reads368359 8 40 T reads478534 8 40 T reads480892 8 40 T reads393966 9 40 T reads679238 9 31 T reads525825 9 40 T reads826721 9 40 T reads592887 9 35 G reads417634 9 40 T reads326659 10 40 T reads323492 10 40 T reads640026 10 40 T reads451888 10 40 T reads366815 11 40 T reads397673 11 40 T reads74632 11 40 T reads839435 11 40 T reads659556 11 40 T reads326632 11 40 T reads284660 11 40 G reads626104 11 40 T reads363369 12 40 T reads101834 12 40 T reads775301 12 40 T reads813937 12 40 T reads400311 12 40 T reads718250 13 40 T reads154318 14 40 T reads306085 14 40 T reads253631 14 40 T reads531577 14 40 T reads740898 14 40 T reads369383 14 40 G reads664861 15 40 T reads627193 15 40 T reads785399 15 40 T reads696905 16 40 T reads223391 16 40 T reads220905 16 40 T reads795896 17 40 T reads123964 17 36 T reads270134 17 40 T reads729814 17 40 T reads706013 18 40 G reads771065 18 40 T reads23319 18 40 T reads159284 18 40 G reads582158 18 40 G reads2810 18 40 T reads132311 19 40 T reads544634 19 40 T reads612874 19 40 T reads195249 19 40 T reads314329 20 40 T reads788685 20 34 T reads376081 20 40 G reads323020 20 40 T reads692285 20 40 T reads388060 21 36 T reads574428 21 28 T reads78894 21 40 G reads565517 21 40 T reads792573 21 40 T reads80435 21 40 T reads27863 22 40 T reads628640 22 40 T reads466564 22 40 G reads79284 22 40 T reads160836 22 40 T reads502444 24 40 T reads423344 25 40 T reads241616 25 38 T reads565037 25 40 T reads243820 26 40 T reads525368 26 40 T reads1190 26 40 T reads371227 27 30 T reads508652 27 40 T reads248631 31 25 T reads378827 35 39 G reads441739 35 30 T reads472480 2 40 T reads741713 2 40 T reads214763 2 40 T reads499892 1 40 T reads678967 1 40 T reads673648 1 40 T reads234731 1 40 T reads120284 1 40 T reads686844 1 40 T reads108071 1 40 T reads138916 1 40 T reads293204 1 40 chromsome:ref.fa Polymorphism Sites:1163 NT Read_name Read_site quality score T reads759074 2 40 A reads140426 2 40 A reads651536 2 40 A reads208856 2 40 A reads405382 2 40 A reads674385 2 40 A reads585824 2 34 A reads459670 2 40 A reads85398 2 40 A reads714560 2 40 A reads206568 3 40 A reads373689 3 40 A reads312585 3 40 A reads627591 3 40 A reads581245 3 40 A reads594882 3 40 A reads351927 3 40 A reads142282 3 40 A reads601350 3 40 A reads439413 3 40 A reads577938 3 40 A reads421802 4 40 A reads425773 4 40 A reads818928 4 40 A reads597405 4 40 A reads473809 4 40 A reads172458 4 40 A reads454765 4 40 A reads824685 5 40 A reads436124 5 40 A reads670140 5 40 A reads415644 5 40 A reads395089 5 40 A reads122786 5 40 A reads677039 5 40 A reads248488 5 40 A reads637977 5 40 T reads246019 5 40 A reads415783 5 40 A reads465607 5 40 A reads523382 6 40 A reads50605 6 40 A reads675610 6 40 A reads638422 6 40 A reads68 6 40 A reads54372 6 40 A reads259277 6 40 A reads99628 6 40 A reads93900 7 40 A reads853369 7 30 A reads662590 7 40 A reads699259 7 40 A reads480837 7 40 A reads634203 7 40 A reads723956 7 40 A reads127552 7 40 A reads279736 7 40 A reads653729 8 40 A reads618910 8 40 A reads450510 8 40 A reads853905 8 40 A reads427739 8 40 A reads668720 8 40 A reads345414 8 40 A reads201651 8 40 A reads550322 8 40 T reads725103 8 40 A reads231532 9 40 T reads649456 9 40 A reads619600 10 40 A reads723597 10 40 A reads176909 10 40 A reads536151 10 40 A reads379721 10 40 A reads717152 10 40 A reads616513 10 40 A reads297584 10 39 A reads814479 10 32 A reads320543 10 40 T reads197850 11 40 A reads838579 11 40 A reads685616 11 40 A reads188760 11 40 A reads651769 11 40 A reads821829 11 40 A reads165507 11 40 A reads743062 11 40 A reads227938 11 40 A reads245221 12 40 A reads183045 12 40 A reads27893 13 40 A reads220083 13 40 A reads834902 13 40 A reads719432 13 40 A reads464298 13 40 A reads622124 13 38 A reads322120 13 40 A reads381805 13 40 A reads776282 14 40 A reads249272 15 40 A reads387579 15 30 A reads217438 15 40 A reads397474 15 40 A reads68319 16 40 A reads411983 16 40 A reads579236 16 40 A reads263071 16 40 A reads68825 16 40 A reads608231 17 40 A reads77598 17 40 A reads345301 17 40 A reads17009 17 40 A reads219024 17 40 A reads853431 18 30 A reads695739 18 40 A reads810275 18 40 A reads263687 18 40 A reads807170 19 40 A reads558846 19 40 A reads279673 19 40 A reads341147 19 40 A reads109922 19 40 A reads670955 19 40 A reads170225 20 40 A reads745803 20 26 A reads420690 20 32 A reads411023 20 32 A reads561102 20 40 A reads512285 21 40 T reads355266 21 40 A reads219729 22 32 A reads475114 22 40 A reads145998 22 32 A reads222208 22 40 A reads643970 22 40 A reads210759 23 40 A reads353391 24 40 A reads466860 24 40 A reads232293 24 40 A reads515892 24 40 A reads172056 25 40 A reads70361 26 30 A reads509535 27 40 A reads326971 29 40 A reads1167 29 26 A reads19227 29 40 A reads838141 30 40 A reads188820 32 30 A reads70596 34 28 A reads139608 35 40 A reads818563 2 40 A reads732683 2 40 A reads473696 1 40 A reads394856 1 40 A reads368185 1 40 A reads71623 1 40 A reads36087 1 40 A reads613734 1 40 A reads53420 1 40 A reads222952 1 40 A reads536066 1 40 chromsome:ref.fa Polymorphism Sites:99499 NT Read_name Read_site quality score A reads443374 1 40 A reads743005 1 40 G reads803078 1 40 A reads487845 1 40 A reads604985 1 40 G reads184234 1 40 G reads452230 1 40 A reads744760 1 40 A reads764595 1 40 G reads260443 2 40 A reads635377 2 40 A reads564439 2 40 A reads156936 2 40 G reads488412 2 40 G reads73506 3 40 G reads123569 3 40 G reads833841 3 40 A reads485394 3 40 A reads562800 3 40 G reads588222 3 40 G reads699784 3 40 G reads686995 3 40 A reads735225 3 40 G reads420626 4 40 A reads504455 4 40 A reads449745 4 40 G reads401139 4 40 A reads313024 5 40 G reads196423 5 40 A reads625047 5 40 G reads81936 5 40 A reads787259 5 40 G reads229119 5 40 A reads485474 5 40 A reads680259 5 40 G reads722696 5 40 A reads17073 6 40 A reads708817 6 40 A reads84163 6 40 G reads430294 6 40 G reads117872 6 40 G reads536247 6 40 G reads595965 6 40 G reads667334 6 40 A reads309002 7 40 G reads610715 7 40 A reads628057 7 40 G reads491909 7 40 G reads530261 7 40 A reads758870 7 40 A reads271810 7 40 A reads455672 7 40 G reads228364 7 40 A reads338638 8 40 A reads844256 8 40 A reads317021 8 40 G reads451244 9 40 A reads319138 9 40 G reads452578 9 40 A reads260543 9 40 G reads251341 9 40 A reads298318 9 40 G reads608684 9 40 G reads488195 10 40 A reads490124 10 40 A reads132778 10 40 A reads211895 10 40 A reads522130 10 40 A reads764181 10 40 G reads508629 10 40 G reads476929 11 40 A reads266841 11 40 G reads652402 11 40 A reads109861 11 40 G reads804730 11 40 G reads802908 11 40 A reads630456 11 31 A reads286597 12 40 A reads450294 12 40 A reads38728 12 40 G reads232557 12 40 A reads12053 13 40 G reads5346 13 40 A reads25487 13 40 A reads400810 13 40 G reads185345 13 40 A reads547240 14 40 A reads134947 14 40 G reads66477 14 40 A reads316558 14 40 A reads198934 15 40 A reads697622 15 40 A reads188776 15 40 A reads119550 15 40 A reads302097 15 40 G reads780586 15 40 A reads260474 15 40 G reads405489 16 40 G reads714195 16 40 A reads678404 16 40 G reads591889 16 40 G reads334694 16 40 A reads386595 16 40 A reads46871 16 30 A reads189276 16 38 A reads586874 16 27 A reads369918 17 31 A reads515943 17 40 G reads85035 17 26 G reads541764 18 40 G reads525762 18 40 A reads852968 18 40 A reads424591 18 40 G reads498445 19 40 G reads493379 19 40 G reads510146 19 40 G reads248661 20 40 A reads525506 20 40 A reads822349 20 33 G reads291462 20 25 A reads194184 20 40 A reads678082 20 40 A reads183369 20 40 G reads136350 21 40 G reads826853 21 40 G reads16739 21 40 G reads809017 21 40 A reads234771 22 40 G reads442268 22 40 G reads621578 22 40 A reads601170 23 40 A reads561040 23 34 A reads231768 23 40 G reads144502 24 40 A reads667296 25 40 A reads30597 25 33 A reads556670 26 30 G reads281164 26 40 A reads690874 26 40 A reads723125 27 40 A reads321577 27 33 A reads827329 27 40 G reads189800 30 40 A reads525903 30 40 G reads803330 31 30 A reads797415 33 27 A reads835889 34 40 G reads234348 34 40 A reads63151 34 30 G reads757411 35 40 A reads289845 35 33 chromsome:ref.fa Polymorphism Sites:99502 NT Read_name Read_site quality score C reads679742 1 40 G reads234504 1 40 C reads80633 1 40 C reads741449 1 40 C reads553821 1 40 G reads267178 1 40 C reads230236 1 40 C reads349470 1 40 C reads838885 1 40 C reads370261 1 40 C reads72272 2 40 C reads425451 2 40 G reads576170 2 40 C reads213512 2 40 C reads260102 2 40 G reads815707 2 40 C reads112157 2 40 G reads13758 2 40 C reads359320 2 40 G reads530559 2 40 C reads331484 2 40 C reads357164 2 40 G reads660336 3 40 C reads42011 3 40 C reads476335 3 40 G reads735500 3 40 C reads443374 4 40 C reads743005 4 40 G reads803078 4 40 C reads487845 4 40 C reads604985 4 40 G reads184234 4 40 G reads452230 4 40 C reads744760 4 40 C reads764595 4 40 G reads260443 5 40 C reads635377 5 40 C reads564439 5 40 C reads156936 5 40 G reads488412 5 40 G reads73506 6 40 G reads123569 6 40 G reads833841 6 40 C reads485394 6 40 C reads562800 6 40 G reads588222 6 40 G reads686995 6 36 C reads735225 6 40 G reads420626 7 40 C reads504455 7 40 C reads449745 7 40 G reads401139 7 40 C reads313024 8 40 G reads196423 8 40 C reads625047 8 40 C reads787259 8 40 G reads229119 8 40 C reads485474 8 40 G reads722696 8 40 C reads17073 9 40 C reads708817 9 40 C reads84163 9 40 G reads430294 9 40 G reads117872 9 26 G reads536247 9 40 G reads595965 9 40 G reads667334 9 40 G reads610715 10 40 C reads628057 10 40 G reads491909 10 40 G reads500381 10 35 G reads530261 10 40 C reads758870 10 40 C reads271810 10 40 C reads455672 10 40 G reads228364 10 40 C reads338638 11 38 C reads844256 11 40 C reads317021 11 40 G reads451244 12 40 C reads319138 12 40 G reads452578 12 28 C reads260543 12 40 G reads251341 12 40 C reads298318 12 40 G reads608684 12 40 G reads488195 13 40 C reads490124 13 40 C reads522130 13 40 C reads764181 13 32 G reads508629 13 40 G reads476929 14 40 C reads266841 14 40 G reads652402 14 40 C reads109861 14 40 G reads804730 14 40 G reads802908 14 40 C reads286597 15 40 C reads450294 15 40 C reads38728 15 40 G reads232557 15 40 C reads12053 16 40 G reads5346 16 40 C reads25487 16 40 C reads400810 16 40 G reads185345 16 40 C reads547240 17 40 C reads134947 17 40 G reads66477 17 40 C reads316558 17 40 C reads198934 18 40 C reads697622 18 40 C reads188776 18 40 C reads119550 18 40 C reads302097 18 40 G reads780586 18 40 C reads260474 18 40 G reads714195 19 40 C reads678404 19 40 G reads591889 19 40 G reads334694 19 40 C reads386595 19 40 C reads46871 19 40 C reads189276 19 40 C reads586874 19 37 C reads515943 20 33 G reads541764 21 40 C reads417451 21 37 G reads339735 21 28 C reads784616 21 40 C reads424591 21 40 G reads498445 22 40 G reads493379 22 40 G reads510146 22 36 G reads248661 23 40 C reads525506 23 40 C reads822349 23 40 C reads194184 23 31 C reads678082 23 40 C reads183369 23 40 G reads136350 24 40 G reads826853 24 40 G reads16739 24 40 G reads809017 24 25 C reads234771 25 40 G reads621578 25 39 C reads561040 26 35 C reads231768 26 38 C reads30597 28 39 C reads690874 29 25 G reads189800 33 35 C reads525903 33 40 G reads803330 34 31 G reads523993 35 29 chromsome:ref.fa Polymorphism Sites:1208 NT Read_name Read_site quality score G reads668360 1 40 G reads501077 1 40 A reads95040 1 40 A reads527057 1 40 A reads139411 1 40 A reads279747 2 40 G reads566059 2 40 G reads253654 2 40 A reads385639 2 40 A reads543845 2 40 G reads846943 2 40 A reads722202 2 40 G reads690078 3 40 G reads596106 3 40 G reads697919 3 40 A reads135386 3 40 A reads411467 3 40 A reads223859 4 40 G reads53421 4 40 G reads178875 4 40 G reads789374 4 32 G reads271756 4 40 G reads116927 4 40 A reads60307 4 40 G reads546792 4 40 A reads490120 5 40 G reads191897 5 40 G reads96850 5 40 G reads11936 5 40 A reads449742 6 40 G reads481066 6 40 G reads554633 6 40 G reads460046 6 40 A reads558539 6 40 A reads163278 6 40 A reads361117 6 40 A reads237751 7 40 A reads803487 7 40 G reads207015 7 40 A reads23061 7 40 A reads509726 7 40 G reads850153 7 40 G reads767814 8 40 A reads471152 8 40 G reads764763 8 40 A reads482731 9 40 G reads324870 9 34 A reads386532 9 40 G reads633696 9 40 A reads497891 10 40 G reads389157 10 40 A reads775733 11 40 G reads103302 11 40 A reads607380 11 40 A reads844113 11 34 A reads125147 11 40 A reads35040 11 40 G reads595000 11 40 A reads650885 11 40 G reads750639 12 40 G reads266577 12 40 G reads641099 13 40 G reads478192 13 40 A reads776481 13 39 G reads757214 14 40 G reads628727 14 40 G reads25464 14 25 G reads754631 14 40 G reads304168 14 40 G reads402903 14 25 A reads283243 15 27 G reads749866 15 40 G reads251745 15 40 A reads567035 15 37 A reads422855 15 40 A reads447237 15 40 G reads294642 15 40 G reads45555 15 40 G reads497469 15 40 A reads193847 15 40 G reads196474 16 40 G reads21030 16 40 A reads448257 16 40 G reads595586 17 40 G reads483650 17 40 G reads272329 18 40 A reads388649 18 36 A reads849206 18 40 G reads457257 19 40 G reads577409 19 40 G reads591611 20 40 G reads156453 20 33 A reads90938 20 40 G reads682405 20 40 A reads715304 21 40 G reads703810 23 40 A reads783616 24 40 A reads618647 25 40 G reads692999 26 25 A reads329068 26 40 G reads509527 26 40 G reads721578 26 40 G reads98485 27 40 A reads139714 30 32 G reads411668 30 40 G reads780352 30 40 G reads832188 32 40 G reads362899 32 28 G reads217067 32 31 A reads290869 34 25 A reads560759 1 40 chromsome:ref.fa Polymorphism Sites:99561 NT Read_name Read_site quality score C reads715928 2 40 A reads357984 2 40 A reads166269 2 40 A reads237417 2 40 A reads6880 2 40 A reads48466 2 40 A reads656573 3 40 A reads506769 3 40 A reads2739 3 40 A reads187969 3 40 A reads423461 3 40 A reads371208 3 40 A reads842416 3 40 A reads675410 3 40 C reads762318 3 40 A reads206972 3 40 A reads375133 4 40 A reads780558 5 40 A reads453195 5 40 A reads9162 5 40 A reads637121 5 40 A reads537869 5 40 A reads575564 5 40 A reads24745 6 40 A reads359943 6 40 A reads614968 6 40 A reads678787 6 40 A reads845805 6 40 A reads275919 7 40 A reads495612 7 40 A reads175175 7 40 A reads417059 7 40 A reads768650 8 40 A reads747534 8 40 A reads351950 8 40 A reads304480 8 40 A reads329041 8 32 A reads683443 8 40 A reads124312 8 40 A reads751814 8 40 A reads634230 8 40 A reads60278 8 40 A reads480973 8 40 A reads268391 9 40 A reads813445 9 40 A reads724831 9 40 A reads522944 9 40 A reads611111 9 40 A reads494290 9 40 A reads465377 10 40 A reads555052 10 40 A reads785587 10 40 A reads334489 10 40 A reads556051 10 32 A reads123187 10 40 A reads475940 11 40 A reads300750 11 27 A reads698889 11 40 A reads422194 11 25 A reads542325 11 40 A reads820114 11 40 C reads635947 11 40 A reads148673 11 40 A reads518627 11 40 C reads211898 11 40 A reads477548 11 33 A reads49362 11 40 A reads316667 12 40 A reads452297 12 40 A reads400504 12 25 A reads299269 12 40 A reads246871 12 40 A reads653498 12 37 A reads541256 12 33 A reads824795 13 40 A reads289419 13 40 A reads487885 13 40 A reads510226 13 40 A reads717896 13 40 A reads593191 13 40 A reads663172 14 40 C reads456005 14 36 A reads699499 14 40 A reads499363 14 40 A reads78262 15 40 A reads658325 15 40 A reads804557 15 40 A reads646424 15 40 A reads543935 15 40 A reads315087 15 40 A reads382027 16 40 A reads243272 16 40 A reads597053 16 40 A reads661399 16 40 C reads294559 17 36 A reads836725 17 40 A reads507877 17 40 A reads32657 17 28 A reads299946 17 38 A reads620004 17 40 A reads201162 17 40 A reads152040 18 40 A reads2966 18 40 A reads220615 18 40 A reads172146 18 40 A reads509959 18 40 A reads799027 19 40 C reads795922 19 40 A reads4275 19 26 A reads825741 19 40 A reads146692 19 27 A reads340301 20 40 A reads235868 20 40 C reads4533 20 34 A reads424005 20 40 A reads479669 20 40 A reads277848 20 40 A reads312744 20 40 A reads318800 21 40 C reads564938 21 40 A reads466481 21 40 A reads11858 21 40 A reads281219 21 40 A reads559051 22 25 A reads492977 22 40 A reads686955 22 25 A reads780874 22 40 A reads32891 22 40 A reads255024 22 40 A reads178438 22 40 A reads108208 23 40 A reads483624 23 31 A reads643872 24 31 C reads467448 24 40 A reads175104 24 25 A reads237228 24 32 A reads29191 24 40 A reads312243 25 40 A reads84986 25 40 A reads212640 25 32 A reads363069 25 31 A reads60896 26 40 A reads517344 27 40 A reads335544 28 40 A reads126192 28 40 A reads681134 28 40 A reads329117 29 36 A reads640042 31 33 A reads39813 31 40 A reads633073 31 40 A reads534476 35 40 A reads207900 2 40 A reads341779 1 40 A reads463846 1 40 A reads379866 1 40 A reads782455 1 40 A reads157283 1 40 A reads730923 1 40 A reads106903 1 40 A reads829972 1 40 chromsome:ref.fa Polymorphism Sites:1288 NT Read_name Read_site quality score G reads211291 2 40 G reads377345 2 40 G reads140869 2 40 A reads482413 2 40 A reads714098 2 40 A reads726507 2 40 G reads117006 3 40 G reads26792 3 40 G reads27714 3 40 G reads245292 3 40 G reads344580 3 40 A reads796740 4 40 G reads257499 4 40 A reads570715 4 40 G reads738176 5 40 G reads172363 5 40 G reads189641 6 40 A reads840292 6 40 A reads480436 6 40 G reads508227 6 40 A reads585817 6 40 G reads485237 6 40 G reads221240 6 40 G reads570664 6 40 A reads703809 6 40 A reads156379 6 40 A reads159753 7 40 G reads457675 7 40 A reads583911 7 40 G reads158986 8 40 G reads478640 8 40 A reads805427 8 40 G reads581178 8 40 G reads7092 8 40 G reads608077 8 40 G reads569785 8 25 A reads810514 8 40 G reads665147 8 40 G reads193171 9 40 G reads778482 9 40 A reads118004 9 40 G reads478525 9 40 A reads368989 9 40 G reads630219 9 40 G reads178098 9 40 G reads454713 9 40 G reads232120 9 40 G reads313252 9 40 A reads7359 10 40 G reads377630 10 40 G reads249334 10 40 A reads803295 10 40 G reads247417 10 40 A reads37255 10 32 G reads23330 11 40 G reads129155 11 40 G reads640829 11 40 A reads426422 11 32 G reads619386 11 40 G reads336051 11 40 G reads621959 11 40 A reads259057 12 40 G reads383801 12 40 G reads538464 12 39 G reads570382 12 40 G reads835752 12 40 A reads844681 12 40 G reads635848 12 40 A reads720686 12 40 A reads809505 13 34 A reads744083 14 40 G reads41347 14 40 A reads580841 15 40 G reads713207 15 33 G reads700508 16 40 G reads269121 16 40 A reads494942 16 40 G reads3857 17 40 A reads722865 17 40 G reads386709 17 40 G reads546353 17 40 A reads71784 17 40 A reads756665 17 38 G reads705982 18 28 G reads225555 18 40 A reads735132 18 40 G reads204950 18 40 A reads156914 19 40 A reads51380 19 40 G reads167081 19 40 A reads355049 19 40 G reads483343 19 40 A reads175773 19 40 G reads209229 19 40 G reads830777 19 40 G reads306731 20 40 A reads7888 20 27 A reads786817 20 40 G reads740442 21 40 G reads421293 21 40 G reads444666 21 31 A reads24176 21 40 G reads572947 21 40 A reads48288 22 40 G reads189776 22 40 A reads160615 22 40 A reads722633 23 35 G reads284588 23 40 A reads113303 25 40 G reads562720 25 33 G reads333518 25 40 A reads205500 25 33 G reads314871 26 40 G reads22981 26 40 A reads432758 30 34 A reads195244 30 30 G reads273722 32 26 A reads440941 2 40 A reads628277 2 40 chromsome:ref.fa Polymorphism Sites:1306 NT Read_name Read_site quality score A reads428854 1 40 A reads812836 1 40 A reads366794 1 40 G reads116346 1 40 A reads250060 2 40 G reads686313 2 40 A reads616091 2 40 G reads66712 2 40 A reads474839 2 40 A reads23205 2 40 G reads718020 3 40 A reads34237 3 40 A reads664764 3 40 G reads628505 3 40 G reads525574 3 40 G reads387539 3 40 G reads306224 3 40 G reads395037 4 40 A reads100348 4 40 A reads191550 4 40 G reads475865 4 40 G reads682012 4 40 G reads299206 4 40 G reads367604 4 40 G reads736083 4 40 A reads524984 4 40 A reads379000 4 40 A reads468362 5 40 A reads118864 5 40 G reads272079 5 40 G reads280261 5 40 A reads347386 5 40 G reads233984 5 40 A reads724781 5 40 A reads802662 5 40 A reads349257 5 40 G reads459721 6 40 G reads621839 6 40 A reads763523 6 40 G reads316874 6 40 G reads369593 6 40 A reads152945 6 40 A reads644669 6 40 G reads224499 7 40 A reads747832 7 40 A reads390031 7 40 A reads441703 7 40 G reads352444 8 40 G reads509223 8 39 G reads283046 9 40 A reads547530 9 40 G reads844943 9 40 A reads632282 10 40 A reads48249 10 40 A reads194113 10 40 G reads677219 10 40 A reads601326 11 40 G reads7472 11 40 G reads43682 11 40 G reads448075 11 40 A reads403243 12 40 A reads15351 12 40 G reads134959 12 40 A reads620876 12 40 G reads264485 12 40 G reads428283 13 40 A reads667250 13 26 G reads458526 13 40 A reads14596 13 40 A reads35270 13 40 A reads674366 13 40 A reads232062 13 40 A reads285258 14 40 A reads472747 14 40 A reads690018 14 40 A reads148898 14 40 A reads750007 15 29 G reads52054 15 40 A reads813446 15 40 A reads142426 15 40 G reads810093 16 40 A reads73738 16 39 A reads312169 16 40 A reads123112 16 40 A reads607624 16 40 G reads240999 16 40 A reads340518 17 37 A reads125890 17 40 A reads282335 17 40 A reads644732 18 40 G reads763678 18 40 G reads106338 18 40 A reads341790 18 40 A reads232011 18 40 A reads326861 18 35 G reads628277 20 30 G reads440941 20 30 A reads140869 20 40 A reads117006 21 40 A reads26792 21 40 A reads27714 21 40 A reads245292 21 40 A reads172363 23 29 A reads189641 24 40 G reads840292 24 40 G reads585817 24 40 A reads221240 24 39 A reads570664 24 40 G reads703809 24 39 G reads159753 25 29 G reads583911 25 40 A reads478640 26 40 A reads7092 26 40 A reads778482 27 40 A reads630219 27 35 G reads7359 28 40 A reads377630 28 40 A reads640829 29 40 A reads383801 30 40 A reads570382 30 40 G reads744083 32 37 A reads713207 33 27 A reads3857 35 27 G reads722865 35 28 A reads168776 35 25 A reads546353 35 40 chromsome:ref.fa Polymorphism Sites:1322 NT Read_name Read_site quality score G reads815191 1 40 G reads674883 1 40 G reads561434 1 40 G reads331907 1 40 T reads397876 1 40 T reads789515 1 40 G reads691774 1 40 G reads733982 2 40 G reads508369 2 40 G reads641475 2 40 G reads309489 2 40 G reads17924 3 40 G reads421025 3 40 G reads550436 4 40 T reads624646 4 40 G reads600706 4 40 T reads809807 4 40 T reads580041 4 40 G reads69208 4 40 G reads556124 5 40 G reads91580 5 40 T reads392976 5 40 T reads143374 5 40 T reads66185 5 40 G reads719495 5 40 T reads703302 6 40 T reads726689 6 40 G reads771187 6 40 G reads791668 6 40 G reads188586 7 40 T reads854409 7 40 T reads516260 7 40 T reads156569 7 25 G reads496057 7 40 T reads34367 7 40 G reads534740 7 40 T reads706714 7 40 G reads814640 7 40 G reads309108 7 40 G reads112453 7 40 T reads659105 7 40 G reads524465 7 40 T reads532779 8 40 T reads102147 8 40 G reads779225 8 40 T reads510083 8 40 T reads358366 8 40 G reads239322 8 40 G reads530123 8 40 G reads316815 8 40 G reads612189 9 40 T reads38089 9 40 G reads587692 9 40 T reads256393 9 40 G reads205310 10 40 G reads547374 10 40 G reads115687 10 40 G reads716486 10 40 G reads267906 10 40 T reads391791 11 40 G reads61760 11 40 G reads602327 11 40 G reads839360 11 40 G reads381013 12 40 G reads222390 12 40 G reads52588 12 40 G reads333884 12 40 T reads568862 13 40 T reads293775 13 40 G reads847858 13 40 T reads39931 14 40 G reads428797 14 40 T reads762821 14 40 G reads653232 14 40 G reads2545 14 40 G reads519272 15 40 G reads346107 15 40 G reads542005 15 40 G reads593340 15 40 G reads788946 15 40 G reads117802 15 40 G reads262553 16 40 T reads82564 16 40 T reads30493 16 39 T reads520796 16 40 G reads366794 17 40 G reads250060 18 40 T reads686313 18 40 G reads616091 18 31 T reads66712 18 40 G reads474839 18 38 G reads23205 18 40 T reads718020 19 38 T reads628505 19 29 T reads475865 20 31 T reads367604 20 25 G reads524984 20 40 G reads379000 20 40 T reads272079 21 40 T reads316874 22 40 G reads644669 22 34 G reads390031 23 27 G reads441703 23 34 T reads352444 24 40 T reads283046 25 40 T reads844943 25 40 G reads601326 27 40 T reads43682 27 35 G reads620876 28 26 T reads458526 29 40 G reads14596 29 39 G reads674366 29 40 G reads472747 30 40 T reads52054 31 31 G reads142426 31 40 G reads607624 32 40 T reads763678 34 37 T reads106338 34 40 T reads842732 1 40 chromsome:ref.fa Polymorphism Sites:99666 NT Read_name Read_site quality score A reads37494 1 40 T reads623951 1 40 T reads846032 1 40 T reads532793 1 40 T reads103316 1 40 T reads427354 2 40 T reads335933 2 40 T reads520985 2 40 T reads806274 2 40 T reads188224 3 40 A reads223430 3 40 A reads760498 3 40 T reads521715 3 40 T reads795478 3 40 A reads64869 3 40 T reads655569 4 40 A reads122701 4 40 T reads824410 4 40 T reads195871 4 40 T reads61416 4 40 T reads119456 4 40 T reads399065 4 40 T reads690573 4 40 T reads504331 4 40 T reads489969 4 40 A reads780267 4 40 T reads746614 5 40 T reads543480 5 40 A reads159122 5 40 A reads580801 5 40 T reads762151 5 40 T reads163279 5 40 T reads181063 5 40 T reads488160 5 40 T reads503142 5 40 T reads209332 5 40 T reads505284 5 40 T reads804884 5 33 A reads102936 6 40 A reads274251 6 40 T reads577573 6 40 T reads738116 6 40 T reads468602 6 40 A reads603153 6 35 T reads764104 6 40 T reads321823 6 40 A reads585082 6 40 A reads579095 6 40 A reads607255 6 40 A reads637379 6 40 T reads359308 6 40 T reads360266 7 40 T reads32985 7 40 T reads196870 7 40 T reads538507 7 40 T reads825547 7 40 T reads370833 7 40 T reads225168 7 40 T reads340683 8 40 T reads152858 8 40 T reads286853 8 40 T reads610938 9 40 T reads742555 9 40 A reads458053 9 40 T reads492204 9 40 T reads422952 9 40 A reads306054 9 40 T reads101482 9 40 T reads294719 10 40 T reads207832 10 40 T reads372863 10 40 T reads811185 10 40 T reads79321 10 40 A reads722331 10 40 A reads691411 10 40 T reads198812 10 40 A reads272512 10 40 T reads512428 10 40 A reads838242 10 40 T reads224292 10 40 T reads495900 10 40 A reads281710 11 40 A reads537775 12 32 T reads456469 12 40 A reads288231 12 40 T reads64134 12 40 T reads664870 12 40 T reads170399 12 40 T reads856041 13 35 T reads325871 13 34 A reads549301 13 40 T reads722430 13 40 T reads660547 13 40 T reads91658 14 40 T reads632618 14 40 T reads513928 14 40 A reads751097 14 39 T reads601118 14 40 T reads218138 14 40 T reads225725 14 40 T reads752155 14 40 A reads716100 14 40 A reads608051 14 40 A reads74069 15 28 T reads444456 15 40 T reads305264 15 40 T reads604459 15 40 T reads497593 15 40 T reads335252 16 40 T reads48800 16 40 T reads471537 16 39 T reads736640 16 40 T reads631496 16 40 T reads451702 16 40 T reads323400 17 40 T reads414140 17 40 T reads451663 17 40 A reads506280 18 40 A reads463346 18 40 T reads845483 18 40 A reads367530 18 40 T reads510062 18 40 T reads1010 18 40 A reads833555 19 40 A reads855623 19 40 T reads827538 20 38 A reads729436 20 40 T reads183467 20 40 A reads149527 21 40 T reads274074 21 40 T reads321624 21 40 T reads547123 22 40 A reads564873 22 38 T reads708976 22 40 T reads87892 22 40 T reads411751 23 40 A reads168707 23 40 T reads326347 23 40 T reads595157 24 40 T reads173511 24 40 A reads686533 24 40 A reads231421 24 40 T reads305344 26 29 T reads115531 26 40 T reads262824 27 40 T reads763958 27 40 A reads366993 27 40 A reads153045 29 40 T reads143849 29 40 T reads823564 30 40 T reads312013 31 40 T reads53493 34 40 T reads652950 1 40 T reads130020 1 40 T reads483671 1 40 chromsome:ref.fa Polymorphism Sites:1359 NT Read_name Read_site quality score C reads253048 2 40 G reads808011 2 40 G reads290763 2 40 G reads70559 2 40 G reads276011 3 40 G reads174780 3 40 G reads78182 3 40 G reads412832 3 40 C reads634498 3 40 G reads742303 3 40 G reads172820 4 40 C reads2648 4 40 G reads230397 4 40 G reads638453 4 40 G reads809085 4 40 G reads536176 4 40 G reads218087 4 40 G reads66228 4 40 G reads166262 4 40 G reads516827 4 40 G reads770866 4 40 G reads29343 4 40 G reads339450 4 40 G reads322008 4 40 G reads574786 5 40 G reads779900 5 40 G reads712981 5 40 G reads555436 5 40 G reads75521 5 40 G reads611768 5 40 G reads796444 5 40 G reads856659 6 40 G reads477591 6 40 G reads524365 6 40 G reads264744 6 40 C reads16887 6 40 G reads807912 6 40 G reads501156 6 40 C reads21958 6 40 G reads272129 7 40 G reads719274 7 35 G reads76478 7 40 C reads234732 7 40 G reads181712 7 40 G reads770333 7 40 G reads160090 8 40 G reads673992 8 40 G reads126017 8 40 G reads817444 8 40 G reads774965 8 40 G reads49056 9 36 G reads292562 9 40 G reads494048 9 40 G reads350442 10 40 C reads90366 10 40 G reads20754 10 40 G reads181509 10 40 G reads526266 10 40 C reads779347 10 40 G reads175808 11 40 G reads544911 11 40 G reads632780 11 40 G reads476971 12 40 G reads381943 12 40 G reads609453 13 40 G reads99304 13 40 G reads316333 13 40 G reads604976 13 40 G reads152393 13 40 G reads446559 14 40 G reads835622 14 40 G reads142669 14 40 G reads550111 14 35 G reads680105 15 40 G reads816878 15 40 G reads812562 16 40 G reads287531 16 40 G reads68051 16 40 G reads834112 16 40 C reads52593 16 40 G reads183870 16 40 G reads347323 16 40 G reads722806 17 40 G reads522476 17 40 G reads535974 17 40 G reads520386 17 26 G reads679514 18 40 C reads287283 18 40 G reads608201 18 40 G reads204750 18 37 G reads211479 18 40 G reads749841 19 40 G reads792379 19 40 G reads560158 19 40 G reads736703 19 38 G reads34041 20 30 G reads357148 20 40 C reads37513 20 40 G reads310489 21 40 G reads53895 22 40 G reads183147 22 40 G reads588156 22 40 G reads102656 22 40 G reads641701 22 40 G reads21453 23 34 G reads739478 23 33 G reads19972 24 40 G reads128635 24 40 G reads583271 25 40 G reads17164 25 40 G reads115538 26 40 G reads434246 26 27 G reads700377 27 40 G reads6285 28 40 G reads80299 30 40 G reads568675 30 40 G reads505577 30 40 C reads237640 32 40 G reads653325 33 40 G reads504974 33 39 G reads570226 34 40 G reads167546 2 40 G reads297405 2 40 G reads512623 2 40 G reads531335 2 40 G reads223240 2 40 G reads158759 1 40 G reads853691 1 40 G reads204336 1 40 G reads534423 1 40 G reads399255 1 40 G reads9465 1 40 G reads819658 1 40 G reads662027 1 40 G reads765423 1 40 G reads249878 1 40 G reads504845 1 40 G reads451395 1 40 chromsome:ref.fa Polymorphism Sites:1407 NT Read_name Read_site quality score C reads70799 1 40 C reads807729 1 40 C reads730721 1 40 C reads233271 1 40 C reads185875 2 40 C reads196135 2 40 A reads133132 2 40 A reads272557 2 40 A reads527744 2 40 C reads213542 3 40 C reads531445 3 40 C reads377420 3 40 C reads83487 3 40 C reads100030 3 40 C reads251085 3 40 C reads204621 3 40 C reads348047 3 40 C reads106016 3 40 A reads308204 3 40 C reads312573 4 40 A reads225997 4 40 C reads633808 4 40 A reads855829 4 40 C reads800396 4 40 A reads563926 4 40 C reads268652 4 40 C reads634475 4 40 C reads848392 4 40 A reads122670 4 40 A reads323638 5 40 C reads821386 5 40 C reads183849 5 40 C reads77107 5 40 A reads834536 5 40 C reads72205 5 40 A reads174250 6 40 C reads90099 6 40 C reads60347 6 40 C reads112352 6 40 C reads49169 6 40 C reads142929 7 40 A reads509029 7 40 A reads695899 7 40 A reads348203 7 40 C reads542260 8 40 C reads520732 8 40 C reads585279 8 40 C reads350958 8 40 C reads720560 8 40 C reads664306 9 40 C reads70068 9 40 C reads710938 9 40 C reads75809 9 40 A reads103825 9 40 A reads12440 9 40 C reads358422 9 40 A reads671561 9 40 A reads812875 9 40 C reads443510 9 37 C reads557224 9 40 C reads229486 9 40 C reads378617 10 40 C reads452990 10 40 A reads578313 10 40 C reads257234 10 40 C reads668106 10 40 C reads154307 10 40 C reads664516 10 40 A reads624482 10 40 A reads661141 11 40 A reads470842 11 40 C reads585940 11 40 C reads446662 11 40 C reads634031 11 40 C reads674561 11 30 C reads406620 12 40 C reads516248 12 40 C reads133811 12 35 C reads534281 12 40 C reads600014 12 37 C reads445830 12 40 A reads508526 12 40 C reads209616 13 40 C reads246683 13 40 A reads186255 13 40 C reads104581 13 40 C reads847244 13 40 C reads14559 13 40 A reads398017 13 40 C reads241998 13 40 C reads710569 14 40 C reads428600 14 40 C reads22854 14 40 C reads816062 14 40 C reads175152 14 40 C reads336516 14 40 C reads132993 14 40 C reads511630 14 40 C reads233370 14 40 A reads571120 15 32 A reads311480 15 40 A reads91547 15 40 C reads573089 15 40 C reads435312 15 40 A reads371250 15 40 A reads747547 15 40 A reads584288 15 40 A reads53517 15 40 A reads345987 15 40 C reads244802 15 40 C reads827036 16 40 C reads747384 16 40 C reads795427 16 40 C reads337294 16 40 A reads70854 16 40 C reads570570 17 40 A reads371223 17 31 A reads687401 18 38 A reads531991 18 35 C reads229608 18 39 C reads827413 19 40 A reads813114 19 40 C reads533012 20 40 C reads440934 20 40 A reads200422 20 40 C reads83867 20 25 A reads799625 20 40 C reads217714 20 40 C reads63281 20 40 C reads177319 21 33 C reads659096 21 40 C reads370907 21 40 C reads458787 21 29 C reads458195 22 40 C reads685179 22 29 C reads632790 23 40 A reads429924 24 40 C reads283200 24 40 C reads84565 24 40 A reads119030 25 40 A reads428905 26 40 C reads436502 26 37 A reads35120 27 40 C reads644621 27 33 C reads830884 27 35 C reads346693 28 27 C reads806929 28 40 C reads781985 29 40 A reads562221 29 40 C reads83826 30 30 C reads22253 31 40 A reads584715 31 40 C reads489515 31 40 C reads167020 33 40 C reads358732 33 33 C reads387027 34 39 A reads33173 35 40 C reads613255 35 37 chromsome:ref.fa Polymorphism Sites:99735 NT Read_name Read_site quality score G reads421391 1 40 T reads487526 1 40 T reads571130 1 40 T reads644979 2 40 T reads763301 2 40 T reads633704 2 40 T reads598127 2 40 T reads446633 2 40 T reads179373 2 40 T reads557130 3 40 T reads8133 3 40 T reads487031 3 40 T reads186392 3 40 T reads61726 3 40 T reads83073 3 40 T reads105771 3 40 G reads502787 4 40 T reads496528 4 40 T reads784532 4 40 T reads585576 4 40 T reads407221 4 40 T reads37081 4 40 T reads42152 4 40 G reads410406 5 40 T reads797587 5 40 T reads602724 5 40 T reads110996 5 40 T reads122329 5 40 T reads805421 5 40 T reads598520 5 40 T reads395505 5 40 T reads648695 5 40 T reads732830 5 40 T reads150646 5 40 T reads370403 5 40 T reads458404 6 40 T reads318603 6 40 T reads587143 6 40 G reads544268 6 40 T reads795686 6 40 T reads170707 6 40 T reads244918 6 40 T reads231867 6 40 T reads537288 7 40 T reads229703 7 40 T reads428310 7 40 T reads415753 7 40 T reads848873 7 40 T reads520943 7 40 T reads230922 7 40 T reads635161 7 40 T reads92341 8 40 T reads234449 8 40 T reads446080 8 40 T reads684739 8 40 T reads413472 8 40 T reads565894 8 40 T reads467410 8 40 T reads160876 8 40 T reads88713 8 40 T reads391240 8 40 T reads211062 9 40 T reads78825 9 40 T reads435213 10 40 T reads470666 10 40 T reads71747 10 40 T reads32615 10 40 T reads16056 10 40 T reads297232 11 40 T reads495332 11 40 T reads278550 11 37 T reads611843 11 40 T reads809228 11 40 T reads375824 11 40 T reads68678 11 40 T reads759048 12 40 T reads841024 12 40 T reads769133 12 40 G reads406199 12 40 T reads535212 12 40 G reads695405 12 40 T reads388640 12 40 T reads354136 13 40 G reads677668 13 40 T reads331336 13 40 T reads295187 13 40 T reads535704 14 40 T reads415258 14 40 T reads363243 14 40 T reads441575 14 40 T reads319298 14 40 T reads250967 14 40 T reads247899 15 40 T reads121659 15 40 T reads95677 15 26 T reads303092 15 40 T reads194025 15 32 T reads225966 15 40 T reads677862 16 40 T reads545058 16 40 T reads191875 16 36 G reads47121 16 40 G reads475988 17 40 T reads773995 17 40 T reads134226 17 40 T reads341154 17 40 T reads696924 17 40 T reads749123 18 35 T reads657994 18 40 T reads438 18 40 T reads190619 18 40 T reads790546 18 40 T reads100703 18 40 T reads689284 19 40 T reads184152 19 40 T reads454897 19 40 T reads261285 19 40 T reads480294 19 40 T reads695146 20 40 T reads562148 20 40 T reads415529 20 27 T reads198129 20 40 T reads580835 20 38 T reads721102 20 40 T reads719621 20 40 T reads259555 20 40 T reads96645 20 40 T reads113874 21 40 T reads243617 21 39 G reads488748 21 36 T reads781123 22 40 T reads614265 23 40 T reads731306 23 40 T reads325920 24 29 T reads821480 25 40 T reads678537 27 40 T reads187942 28 27 T reads475854 28 31 T reads370999 29 28 T reads846654 31 40 T reads249701 31 40 T reads773045 32 26 T reads493142 35 40 T reads463568 35 29 T reads11187 1 40 T reads164399 1 40 T reads126967 1 40 T reads801157 1 40 T reads366099 1 40 chromsome:ref.fa Polymorphism Sites:99758 NT Read_name Read_site quality score C reads311257 1 40 C reads714441 1 40 C reads581488 1 40 C reads258214 1 40 C reads687632 1 34 C reads582895 2 40 C reads660366 2 40 C reads95721 2 40 G reads150695 2 40 C reads220961 2 40 C reads781289 2 40 G reads159338 2 40 C reads743633 2 40 C reads141657 2 40 C reads784207 2 40 G reads455546 2 40 G reads6634 3 40 C reads603067 3 40 C reads559331 3 40 C reads164738 3 40 C reads238151 4 40 C reads115982 4 40 C reads855614 4 40 C reads157489 4 40 C reads193083 4 40 G reads849846 4 40 C reads103985 5 40 G reads542928 5 40 C reads51387 5 40 C reads497741 5 40 C reads388367 5 40 C reads713854 5 40 C reads710726 5 40 G reads202868 6 40 C reads253679 6 40 G reads600633 6 40 C reads684778 6 40 C reads700883 6 40 C reads401151 7 40 G reads51533 7 40 G reads118320 7 39 C reads734693 7 40 G reads57543 7 40 C reads604125 7 40 G reads359776 7 40 G reads475259 8 40 G reads466037 8 40 C reads170912 9 40 C reads491947 9 40 C reads95894 9 40 C reads226794 9 40 C reads442362 9 40 G reads785420 9 40 C reads68092 9 40 C reads301745 9 40 C reads558142 9 40 C reads360448 9 40 G reads577331 10 35 C reads386728 10 40 G reads455917 10 40 C reads510554 10 40 C reads58258 10 40 G reads725939 11 40 G reads490271 12 40 C reads565742 12 40 G reads66548 12 40 G reads322307 12 40 G reads755416 13 40 C reads553694 13 40 C reads359601 13 40 G reads498633 13 40 G reads55220 13 40 G reads56139 13 40 C reads762687 13 40 C reads470161 13 40 C reads256549 13 40 C reads841709 13 40 G reads365368 13 40 C reads76166 14 40 G reads567290 14 40 G reads59682 14 40 C reads414072 14 40 C reads608032 14 40 G reads798222 14 40 G reads323366 14 40 G reads222693 14 40 C reads273604 15 40 C reads388193 15 40 G reads489010 15 40 C reads261083 16 40 G reads688311 16 40 G reads189312 16 27 C reads215744 17 25 C reads464735 17 40 C reads40719 17 40 C reads375994 18 39 C reads662876 18 40 G reads330425 18 35 C reads814755 18 31 C reads787666 19 33 G reads318698 19 40 C reads543093 19 40 G reads468637 19 40 C reads364962 19 40 C reads179779 19 40 C reads801778 19 40 G reads219599 20 40 G reads266513 20 40 C reads313012 20 34 C reads134084 20 36 C reads293180 20 40 C reads29129 20 40 G reads284804 20 40 C reads830176 20 40 C reads250743 20 40 G reads207605 20 28 C reads462099 21 40 C reads3738 21 31 C reads593748 21 25 G reads585040 22 36 C reads140982 22 33 G reads591836 22 40 G reads327766 23 40 G reads781160 23 37 C reads773845 23 40 G reads366099 24 40 C reads633704 25 40 C reads557130 26 40 C reads8133 26 26 G reads105771 26 40 C reads407221 27 40 C reads318603 29 40 G reads635161 30 40 C reads391240 31 32 C reads435213 33 39 C reads375824 34 40 C reads759048 35 30 C reads695405 35 40 chromsome:ref.fa Polymorphism Sites:1456 NT Read_name Read_site quality score C reads783896 1 40 T reads830819 1 40 C reads93813 1 40 T reads372228 1 40 C reads304015 1 40 C reads343809 1 40 C reads844884 1 40 T reads97415 1 40 T reads589181 2 40 C reads708241 2 40 C reads810671 2 40 T reads292280 2 40 C reads772348 2 40 T reads701979 2 40 T reads267867 3 40 C reads417732 3 40 T reads248392 3 40 C reads846158 3 40 T reads740571 3 40 T reads426290 3 40 C reads135323 3 40 T reads391082 4 40 T reads216076 4 40 T reads311960 4 40 C reads655666 4 40 T reads542217 4 40 C reads414359 5 40 C reads476224 5 40 T reads734531 5 40 C reads692969 5 40 C reads637811 5 40 C reads522609 5 39 C reads532772 5 40 C reads170466 5 40 C reads660991 6 40 C reads529324 6 40 T reads400301 6 40 C reads388757 6 40 C reads826145 6 40 T reads397073 6 40 C reads597246 6 40 T reads742224 6 40 T reads544136 6 40 T reads213489 7 40 T reads752278 7 40 C reads583035 7 40 T reads775225 7 40 T reads96008 7 40 T reads765712 7 40 T reads225415 7 40 T reads122068 7 40 C reads226349 7 40 C reads692810 8 40 C reads299492 8 40 C reads530143 8 40 C reads785626 8 40 C reads334074 9 40 T reads340589 9 40 T reads465364 9 40 C reads613228 9 40 C reads559985 9 40 C reads127811 9 40 T reads675852 9 40 T reads332273 9 40 C reads128186 10 39 T reads55678 10 40 C reads728840 10 40 C reads826723 10 40 T reads13 11 40 T reads381033 11 40 T reads80407 11 40 T reads49420 11 36 T reads818360 13 40 C reads413893 13 40 T reads161974 13 25 T reads604755 13 40 C reads76570 13 40 C reads658023 13 40 C reads659527 13 40 T reads515364 13 40 C reads293524 14 40 C reads400695 14 40 C reads565759 14 28 T reads309191 14 40 T reads626168 14 40 C reads181937 14 40 T reads338687 15 40 C reads252176 15 40 C reads311678 15 40 T reads148452 15 40 C reads165330 16 40 C reads337494 16 40 T reads541113 16 40 C reads291038 16 40 C reads404956 16 40 T reads267095 16 31 C reads855901 16 29 C reads525867 16 40 C reads361806 17 39 T reads505959 17 40 C reads703673 17 40 C reads587084 17 40 T reads447582 17 40 C reads660706 17 40 C reads290733 18 40 C reads433341 18 36 C reads236968 19 40 C reads495374 19 37 T reads450194 19 40 C reads788364 19 25 T reads511852 20 40 C reads70120 20 40 C reads196985 20 40 C reads847095 21 40 C reads71572 21 40 C reads700027 21 40 C reads198752 21 40 C reads38967 21 39 C reads183558 21 40 C reads656314 22 40 T reads69356 22 40 T reads855388 22 40 C reads808567 22 40 C reads376229 22 37 T reads70395 22 40 C reads692893 22 40 C reads591663 24 34 C reads527072 24 40 T reads466118 24 40 T reads188870 24 40 C reads709844 25 40 C reads126679 25 28 C reads699629 25 40 C reads17247 25 40 C reads65936 25 40 C reads762757 26 40 C reads125522 26 32 C reads380950 26 40 C reads251102 28 33 C reads387596 28 40 C reads743695 28 40 C reads174072 29 26 T reads363900 30 33 C reads122051 31 36 C reads350610 35 40 chromsome:ref.fa Polymorphism Sites:1489 NT Read_name Read_site quality score C reads740777 3 40 T reads795249 3 40 T reads615988 4 40 T reads790392 4 40 T reads68634 4 40 T reads1417 4 40 T reads237399 4 40 T reads440227 4 40 T reads309343 4 40 T reads522243 4 40 T reads419359 4 40 T reads11093 4 38 C reads168518 5 40 T reads600684 5 40 T reads566732 5 40 T reads679849 5 40 T reads472806 5 40 T reads89521 5 40 T reads432600 5 40 T reads370320 5 40 T reads686948 5 40 T reads488579 6 40 T reads62966 6 40 C reads114885 6 40 T reads658631 6 40 T reads836724 6 40 T reads380655 6 40 T reads598493 6 40 T reads660767 7 40 T reads702339 7 40 T reads383065 7 40 T reads717229 7 40 T reads264256 7 40 T reads440180 7 40 T reads207469 7 40 T reads61860 7 40 T reads659241 7 40 T reads257595 8 40 T reads140320 8 40 T reads541048 8 40 C reads700797 8 40 T reads43050 8 40 C reads347635 8 40 T reads3910 8 40 T reads295709 8 40 T reads198395 8 40 T reads457058 8 40 T reads21135 9 40 T reads628260 9 40 T reads194884 9 40 T reads38806 9 40 C reads368755 9 40 C reads115432 9 40 T reads676203 9 40 T reads656203 9 40 T reads255728 10 40 T reads818371 10 40 T reads139818 10 40 T reads686212 10 40 T reads655534 10 40 T reads316419 10 40 T reads452774 10 40 T reads153388 11 34 T reads421518 11 40 T reads739408 11 40 T reads584417 11 40 T reads810739 11 40 T reads15222 11 40 T reads780513 11 40 T reads619749 11 40 T reads811036 11 40 T reads29644 12 40 T reads705071 12 40 T reads637949 12 40 T reads513097 12 40 T reads286831 12 40 T reads741116 12 40 T reads119137 12 40 T reads304051 12 40 T reads9588 13 40 C reads205020 13 40 T reads77816 13 40 T reads811022 13 40 T reads468882 13 40 T reads830039 13 40 T reads252308 13 40 T reads138579 14 40 T reads602364 14 40 T reads807068 14 40 T reads846846 15 40 T reads39219 15 40 T reads128280 15 37 T reads343630 15 40 T reads213719 15 40 T reads43876 15 40 T reads823390 15 40 T reads267563 16 40 T reads701021 16 40 T reads435767 17 40 T reads15166 17 37 T reads265105 17 40 T reads355365 17 40 T reads661136 17 40 T reads635500 17 40 T reads589492 17 40 T reads745429 17 40 C reads247691 18 40 T reads334457 18 40 C reads686479 18 40 T reads700109 18 40 T reads87678 19 40 C reads452065 19 40 T reads526263 19 40 T reads394997 19 40 T reads325431 19 40 T reads615028 19 40 T reads615872 20 36 T reads76143 21 40 C reads771799 21 40 T reads138587 21 40 T reads248866 22 33 T reads733362 22 40 T reads383956 22 40 T reads289544 22 40 T reads513458 23 40 T reads284555 24 37 T reads399879 24 40 T reads206869 24 40 C reads708140 25 40 T reads470289 26 32 T reads682021 27 40 T reads615040 27 40 T reads747287 28 40 T reads601080 28 40 T reads143550 29 32 T reads840409 31 40 T reads213927 32 40 T reads516148 32 35 T reads304015 34 26 T reads589181 35 26 T reads346042 3 40 T reads796298 3 40 T reads703676 3 40 T reads447676 3 40 T reads564991 3 40 T reads391527 3 40 T reads554216 2 40 T reads234905 2 40 T reads699696 2 40 T reads294961 2 40 T reads745228 2 40 T reads561977 2 40 T reads312435 2 40 T reads117659 2 40 T reads81223 2 40 T reads833516 2 40 T reads799120 1 40 T reads462623 1 40 T reads270209 1 40 T reads707795 1 40 T reads501359 1 40 T reads92398 1 40 T reads411956 1 40 chromsome:ref.fa Polymorphism Sites:99836 NT Read_name Read_site quality score A reads589349 1 40 C reads507286 1 40 A reads263129 1 40 C reads493413 1 40 A reads802001 1 40 C reads159630 1 40 C reads289167 1 40 C reads586778 1 40 A reads257080 2 40 A reads843042 2 40 A reads532569 2 40 C reads312193 2 40 C reads73582 2 40 C reads722268 2 40 C reads297264 2 40 A reads585441 2 40 C reads283934 2 40 C reads626012 2 40 C reads795298 3 40 C reads330835 3 40 C reads327761 3 40 C reads688011 3 40 C reads458846 3 40 C reads226948 3 40 C reads367659 4 40 C reads752326 4 40 C reads450802 4 40 A reads274811 4 40 A reads272556 4 40 A reads71877 4 40 C reads308582 4 40 A reads694165 4 40 A reads226625 4 40 A reads473531 4 40 C reads390310 5 40 A reads157320 5 40 A reads189056 5 40 A reads555665 5 40 A reads230486 5 40 C reads770860 6 40 C reads720880 6 40 C reads775266 6 40 C reads76531 6 40 A reads127421 6 40 A reads489703 6 40 C reads800452 6 40 A reads261140 6 40 A reads407364 6 40 C reads831350 6 40 C reads438928 6 40 A reads271231 6 40 A reads252132 6 40 A reads62602 6 40 C reads616122 6 40 C reads764698 7 40 A reads469958 7 40 A reads5592 7 40 C reads812283 7 34 C reads853324 7 40 C reads596796 8 40 A reads394531 8 40 C reads842105 8 40 C reads629626 8 40 A reads21725 8 40 C reads705380 8 40 C reads194599 8 36 C reads385938 8 40 A reads63538 8 40 C reads810265 8 40 A reads469688 8 40 A reads409243 9 40 A reads74847 9 40 A reads382701 9 40 A reads359527 9 40 A reads274240 9 40 A reads201639 9 40 A reads382062 9 40 C reads121930 10 40 C reads482689 10 40 C reads841866 10 40 A reads52460 10 40 A reads108454 10 40 A reads128730 10 40 A reads179365 10 40 A reads330563 10 40 C reads43156 10 40 A reads189903 11 40 A reads834202 11 40 A reads54864 11 40 A reads283259 11 40 A reads372079 11 40 C reads174004 11 40 A reads240131 12 31 C reads637309 12 40 C reads104303 12 40 C reads256991 12 31 C reads63669 12 40 A reads507065 12 40 A reads135950 12 40 A reads802831 12 40 A reads706444 12 40 C reads265743 13 40 C reads428178 13 39 C reads36557 13 40 A reads80795 13 29 C reads609501 14 40 A reads4853 14 38 C reads123871 14 40 A reads249024 14 40 C reads735836 15 40 A reads234593 15 40 A reads655159 15 27 C reads615039 15 40 A reads134425 16 40 A reads21073 16 40 C reads352100 16 30 A reads153047 16 32 C reads791631 16 40 A reads528097 16 38 A reads188988 17 35 A reads691507 17 40 C reads626355 17 40 A reads428125 17 40 C reads514520 17 32 C reads780132 17 40 A reads550371 17 40 A reads286550 18 40 C reads794189 18 40 A reads552034 18 40 A reads712374 18 40 A reads437593 18 40 A reads434920 18 40 C reads729032 18 40 A reads849244 18 40 C reads384392 19 40 C reads560258 19 40 C reads83026 19 26 A reads586533 19 35 A reads359490 19 37 C reads779100 20 40 C reads768151 20 40 A reads584461 20 40 A reads549850 21 31 C reads596481 21 29 A reads267467 21 40 A reads393984 21 26 A reads814964 22 40 C reads813927 22 40 C reads812356 22 26 C reads698859 22 34 A reads432799 22 40 A reads514092 22 40 C reads530984 22 40 A reads485880 23 37 C reads283247 23 40 C reads435730 23 40 A reads716236 25 40 A reads362661 27 32 A reads181454 27 40 A reads146970 27 32 A reads412376 27 38 C reads481214 27 40 A reads353453 28 40 A reads383835 28 40 C reads240853 28 35 C reads332086 30 33 A reads430795 33 40 C reads576695 1 40 C reads407282 1 40 chromsome:ref.fa Polymorphism Sites:1537 NT Read_name Read_site quality score A reads644152 1 40 A reads64355 1 40 G reads145666 1 40 G reads20504 2 40 G reads490619 2 40 G reads493340 2 40 G reads458528 2 40 G reads345695 2 40 G reads733546 2 40 G reads745042 2 40 G reads695062 2 40 G reads261447 2 40 G reads27544 2 40 G reads606896 2 40 G reads77207 3 40 G reads755920 3 40 G reads788576 3 40 G reads522185 3 40 G reads352740 3 40 G reads57660 3 40 G reads415914 3 40 G reads428971 3 40 G reads777546 4 40 G reads275956 4 40 G reads852916 4 40 G reads533707 4 40 G reads156367 5 40 G reads505715 5 40 G reads652599 5 40 G reads727835 5 40 G reads351745 5 40 G reads751653 5 40 G reads743613 5 40 G reads635573 6 40 G reads687879 6 40 G reads86608 6 40 G reads594359 6 40 G reads25570 7 40 G reads581947 7 40 G reads186062 7 40 G reads229424 7 40 G reads485812 7 40 G reads611411 7 40 G reads632587 7 40 G reads330348 7 40 G reads825084 7 40 G reads97277 7 40 G reads147011 7 40 G reads138681 8 40 G reads726761 8 34 G reads788673 8 40 G reads838456 8 40 G reads268141 8 40 G reads7210 9 40 G reads274649 9 40 G reads677514 9 40 G reads294095 9 40 G reads832396 9 40 G reads579113 9 40 G reads249493 10 40 G reads666576 10 40 G reads387575 10 40 G reads53003 10 40 G reads618296 11 40 G reads133396 11 40 G reads188306 12 40 G reads756143 12 40 G reads389532 12 40 G reads683065 12 40 G reads483703 12 40 G reads197192 12 40 G reads336006 12 40 G reads12284 13 40 G reads661631 13 40 G reads378600 13 25 G reads743261 13 40 G reads19466 13 40 G reads106781 13 40 G reads2432 14 40 G reads87597 14 40 G reads1237 14 40 G reads512464 14 40 G reads151948 14 40 G reads437925 15 40 G reads765454 15 40 G reads395138 15 40 G reads855016 16 40 G reads105654 16 40 G reads61887 16 40 G reads402795 16 40 G reads89732 16 40 G reads484442 16 40 G reads230553 17 40 G reads735541 17 40 G reads205454 17 40 G reads799028 17 40 G reads348907 17 40 G reads785429 17 34 G reads293939 18 40 G reads32854 18 40 G reads132145 19 40 G reads795057 19 40 G reads423895 19 40 G reads213587 19 40 G reads320594 19 36 G reads630043 19 40 G reads506035 19 40 G reads570449 20 40 G reads408212 21 40 G reads4774 21 40 G reads39899 23 40 G reads465471 23 40 G reads183688 23 25 G reads338744 23 40 G reads312700 23 40 G reads648186 24 38 A reads725550 24 40 G reads56698 24 40 G reads384544 25 37 G reads57324 25 40 G reads844280 25 40 G reads845824 25 40 G reads567624 26 40 G reads115677 26 40 G reads552761 26 40 G reads529678 27 40 G reads331341 28 40 A reads850195 28 30 G reads244436 29 40 G reads724386 29 30 G reads135615 30 38 G reads205668 30 40 G reads43669 33 40 G reads661385 33 40 G reads158212 34 40 G reads393807 34 29 G reads511797 35 40 G reads264802 1 40 chromsome:ref.fa Polymorphism Sites:1569 NT Read_name Read_site quality score G reads35166 4 40 A reads115017 4 40 A reads245125 4 40 A reads292240 4 40 A reads536445 5 40 A reads261215 5 40 A reads696060 5 40 A reads158126 5 40 A reads474729 5 40 A reads563535 5 40 A reads32311 5 40 A reads421183 6 40 A reads49234 6 40 A reads671845 6 40 A reads13185 6 38 A reads696217 6 40 A reads529872 6 40 A reads493354 6 40 A reads213242 6 28 A reads785134 7 40 A reads573425 7 40 A reads727771 7 40 A reads745996 7 40 A reads525540 7 40 A reads68934 7 30 A reads595517 7 40 A reads383445 8 40 A reads224009 8 40 A reads120260 8 40 A reads853215 8 40 A reads708024 8 40 A reads670616 8 40 A reads617122 8 40 A reads593128 8 40 A reads667765 8 39 A reads723819 8 40 A reads592599 9 40 A reads23401 9 40 A reads493835 9 40 A reads601630 9 40 A reads853545 9 40 A reads144805 9 40 A reads167464 9 40 A reads564311 9 40 A reads15605 9 40 A reads434570 9 40 A reads734782 9 40 G reads609593 9 40 A reads428702 9 40 A reads376064 9 35 A reads523322 9 40 A reads378040 9 40 A reads353214 9 40 A reads206558 9 38 A reads454365 10 39 A reads25581 10 40 A reads380625 10 40 A reads208995 10 31 A reads102370 10 40 A reads6042 10 40 A reads445649 10 33 A reads275999 11 32 A reads57930 11 40 A reads289810 11 40 A reads126668 11 40 A reads650263 11 40 A reads90616 11 40 A reads355207 12 40 A reads353393 12 40 A reads834185 12 40 G reads764339 12 40 A reads819827 12 40 A reads238925 12 40 A reads334714 13 40 A reads635703 13 40 A reads627231 13 40 A reads460879 13 40 A reads592252 13 40 A reads631187 13 40 A reads550632 14 40 A reads686232 14 40 A reads815319 14 40 A reads563012 14 40 A reads327582 15 40 A reads232096 15 40 A reads161783 15 40 A reads790559 15 40 A reads353181 15 40 A reads826828 15 40 A reads197809 16 40 A reads79588 16 40 A reads664972 16 40 A reads129980 16 40 A reads732080 17 40 A reads72646 17 40 A reads56028 17 40 A reads201108 17 40 A reads147344 18 40 A reads443649 18 40 A reads422707 19 40 A reads670899 19 40 A reads135631 19 40 A reads281713 19 40 A reads277297 19 38 A reads741261 19 40 A reads244911 20 40 A reads289677 20 40 A reads762287 20 40 A reads790188 20 40 A reads217642 20 33 A reads738169 21 40 A reads557124 21 40 A reads442676 21 40 A reads805966 21 34 A reads271406 21 30 A reads315533 22 40 A reads377873 22 40 A reads798960 22 40 G reads745624 22 40 A reads303569 22 40 A reads454244 23 40 A reads202231 23 40 A reads364963 23 40 A reads83330 23 31 A reads67101 23 40 A reads796125 23 40 A reads235202 24 40 A reads132235 25 40 A reads575842 25 40 A reads44240 25 40 A reads60962 25 37 A reads787278 25 34 A reads382468 26 40 A reads326159 27 33 A reads575319 27 40 A reads698695 28 28 A reads75495 28 40 A reads609800 28 40 A reads145666 33 40 A reads428971 35 40 A reads96715 4 40 A reads571973 3 40 A reads560228 3 40 A reads415485 3 40 A reads458192 3 40 A reads44353 3 40 A reads667767 3 40 A reads101802 3 40 A reads755736 2 40 A reads382375 2 40 A reads532717 2 40 A reads245462 2 40 A reads672143 2 40 A reads128228 2 40 A reads838700 2 40 A reads739368 2 40 A reads443603 2 40 A reads4998 1 40 A reads81820 1 40 A reads232611 1 40 A reads185677 1 40 A reads655235 1 40 A reads225278 1 40 chromsome:ref.fa Polymorphism Sites:99894 NT Read_name Read_site quality score C reads32718 1 40 C reads799080 1 40 C reads120628 1 40 A reads98270 1 40 A reads526888 1 40 C reads208091 1 40 A reads834462 1 40 C reads180400 1 40 C reads271892 1 40 C reads644764 2 40 A reads485309 2 40 A reads227152 2 40 C reads42202 2 40 A reads763816 2 40 A reads544406 2 40 C reads803772 3 40 C reads237435 3 40 C reads261601 3 40 A reads809205 3 40 C reads44134 3 40 A reads550149 3 40 C reads798299 3 40 A reads68426 4 40 C reads497829 4 40 A reads374037 4 40 C reads775775 4 40 C reads146280 4 40 A reads435190 4 40 C reads390999 4 40 C reads830810 4 40 C reads543625 4 40 A reads844919 4 40 C reads644595 4 40 A reads531231 5 40 C reads318643 5 40 A reads239122 5 40 A reads509760 5 40 C reads105546 5 40 C reads480153 6 40 C reads662931 6 40 A reads658567 6 40 A reads160646 6 40 A reads475459 6 40 A reads270598 6 40 A reads25240 7 40 C reads429220 7 40 A reads588513 7 40 A reads628954 7 27 A reads431069 7 40 A reads362532 7 40 A reads810768 7 40 C reads645579 8 40 A reads778966 8 40 A reads806605 8 40 C reads632055 8 40 C reads297415 9 29 A reads93508 9 40 C reads836649 9 40 C reads115924 9 40 A reads683166 9 40 C reads837405 9 40 C reads566744 9 40 A reads211400 10 40 A reads239847 10 40 A reads114340 10 40 A reads770158 10 40 C reads679059 10 40 A reads494404 10 40 C reads180445 11 25 C reads838812 11 40 A reads430737 11 40 A reads437352 11 40 A reads137366 11 40 A reads242975 11 38 C reads112564 11 40 C reads356540 12 40 C reads724684 12 40 A reads597939 12 40 C reads742791 12 40 C reads82449 12 40 C reads384312 12 40 C reads648461 12 40 A reads616839 13 40 C reads342165 13 40 A reads388845 13 40 C reads775620 13 40 C reads783288 13 40 C reads83386 13 40 A reads399091 13 40 C reads711045 14 40 A reads315130 14 40 A reads487663 14 40 C reads340736 14 40 C reads479630 14 40 C reads248369 15 40 C reads338422 15 40 C reads603267 15 40 A reads638719 15 31 C reads241530 16 40 C reads640174 16 40 C reads606947 16 40 C reads26378 16 40 A reads529752 17 29 A reads597930 17 40 C reads694744 17 40 A reads730852 17 40 A reads206228 17 40 C reads764224 18 40 C reads225238 18 40 A reads137311 18 40 C reads78911 19 40 A reads280931 19 40 C reads397550 19 40 C reads290730 19 40 C reads66424 20 40 C reads804862 21 32 C reads317907 21 40 C reads637041 21 25 C reads744964 21 40 C reads265457 21 40 A reads5339 21 40 C reads713243 22 33 A reads702035 23 40 A reads778643 23 40 C reads2468 24 40 C reads854890 24 40 C reads3349 25 40 C reads9474 25 40 C reads656748 25 40 C reads411560 27 34 A reads594561 27 40 C reads398894 27 40 C reads122359 27 38 A reads254471 27 40 C reads301016 28 30 C reads13650 28 40 A reads538010 29 40 A reads37325 34 33 A reads115469 35 40 A reads146112 1 40 chromsome:ref.fa Polymorphism Sites:1601 NT Read_name Read_site quality score T reads517652 1 40 A reads712180 1 40 A reads564783 1 40 A reads166936 1 40 A reads606183 1 40 A reads853436 1 40 A reads654868 2 40 A reads775459 2 40 A reads278392 2 40 A reads163809 2 40 A reads627868 2 40 A reads117999 2 40 A reads580719 2 40 A reads304516 2 40 A reads374727 2 40 A reads642070 2 40 A reads719242 3 40 A reads273619 3 40 A reads785056 3 40 A reads758455 3 40 A reads795719 4 30 A reads709710 4 40 A reads547727 4 40 A reads370197 4 40 A reads186715 4 40 A reads302002 4 40 A reads604629 4 40 A reads134372 5 40 A reads115295 5 40 A reads550972 5 40 A reads30701 5 40 A reads89662 5 40 A reads210817 5 40 A reads669258 5 40 A reads807746 5 40 A reads194465 6 40 A reads337789 6 40 A reads373369 6 40 A reads123418 6 40 A reads719618 6 40 A reads209964 6 40 A reads588763 6 40 A reads630188 6 40 A reads732110 6 40 A reads250430 6 40 A reads143517 7 40 A reads686982 7 40 A reads513502 7 40 A reads512431 7 40 A reads801143 7 40 A reads270161 8 40 A reads501651 8 40 A reads819240 8 40 A reads24708 8 40 A reads635204 8 40 A reads202561 8 40 A reads781831 9 40 A reads190374 9 40 A reads718506 9 40 A reads282860 9 40 A reads538879 10 40 A reads99536 10 40 A reads415835 10 40 A reads125173 10 40 A reads420926 10 40 A reads700657 10 40 A reads606787 10 40 T reads650016 11 40 A reads580325 11 29 A reads229065 11 40 A reads189732 11 40 A reads18823 11 40 A reads721878 11 40 A reads499307 11 40 A reads784783 11 40 A reads571079 11 40 A reads462207 11 40 A reads400197 11 40 A reads638050 12 40 A reads849648 12 40 A reads178261 12 40 A reads693646 12 40 A reads403582 12 40 A reads449173 12 40 A reads767143 13 26 A reads216278 13 40 A reads11731 13 34 A reads566389 13 40 A reads562888 14 40 A reads326568 14 40 A reads382403 14 37 A reads447521 14 40 A reads90561 14 40 A reads468426 14 40 A reads791719 15 40 A reads688877 15 40 A reads333103 15 40 A reads842825 15 40 A reads206266 15 40 A reads443469 15 40 A reads714381 15 40 A reads269284 16 40 A reads414782 16 36 A reads207686 16 40 A reads557011 16 40 A reads73479 17 40 T reads439544 17 40 A reads156498 18 40 A reads258429 18 28 A reads245332 18 40 A reads439304 18 40 A reads427935 19 37 A reads145011 19 40 A reads177020 19 40 A reads377211 19 30 A reads814198 19 40 A reads399156 19 40 A reads581430 20 40 A reads287039 20 40 A reads364774 21 28 A reads379615 21 40 A reads469182 21 40 A reads761957 21 40 A reads395584 22 40 A reads96194 22 30 A reads755474 23 40 A reads140259 23 36 A reads776538 23 40 A reads103622 24 40 A reads828539 24 40 A reads708214 25 27 A reads532107 26 40 A reads390661 27 40 A reads120827 27 40 A reads527597 27 40 T reads3548 27 33 A reads138370 28 40 A reads23224 28 40 A reads21429 28 38 A reads201545 29 40 A reads366882 29 40 A reads413306 29 39 A reads4998 33 40 A reads101802 35 33 A reads560228 35 25 A reads571973 35 37 A reads623245 1 40 A reads582390 1 40 A reads673621 1 40 chromsome:ref.fa Polymorphism Sites:1605 NT Read_name Read_site quality score G reads449070 1 40 G reads590533 1 40 G reads234409 2 40 T reads513802 2 40 G reads534720 2 40 T reads236136 2 40 T reads41597 2 40 T reads40986 2 40 G reads613919 2 40 G reads337564 2 40 G reads770114 2 40 G reads814127 3 40 G reads81578 3 29 G reads497490 3 40 T reads181805 3 40 G reads689906 4 40 T reads342651 4 40 G reads453260 4 40 G reads155891 4 40 T reads47490 4 40 G reads673621 5 40 G reads582390 5 40 G reads623245 5 40 G reads517652 5 40 T reads712180 5 40 T reads564783 5 40 G reads166936 5 40 G reads606183 5 40 G reads853436 5 40 T reads654868 6 40 G reads775459 6 40 T reads278392 6 40 G reads163809 6 40 G reads627868 6 40 G reads117999 6 40 T reads580719 6 40 G reads304516 6 40 T reads374727 6 40 T reads642070 6 40 T reads719242 7 40 G reads273619 7 40 T reads785056 7 40 G reads758455 7 40 G reads709710 8 40 G reads547727 8 40 T reads370197 8 40 G reads186715 8 40 T reads302002 8 40 T reads604629 8 40 G reads134372 9 40 G reads115295 9 40 G reads550972 9 40 T reads30701 9 40 G reads89662 9 40 T reads210817 9 29 G reads669258 9 40 G reads807746 9 40 G reads194465 10 40 G reads337789 10 40 G reads373369 10 40 G reads123418 10 40 T reads588763 10 40 G reads630188 10 37 G reads732110 10 40 G reads250430 10 40 G reads143517 11 40 T reads686982 11 40 G reads513502 11 40 G reads512431 11 40 G reads801143 11 40 T reads270161 12 40 G reads501651 12 40 T reads819240 12 40 G reads24708 12 40 G reads635204 12 40 T reads781831 13 40 G reads190374 13 40 G reads718506 13 40 G reads282860 13 40 G reads538879 14 40 G reads99536 14 40 G reads125173 14 40 G reads420926 14 36 G reads700657 14 40 T reads606787 14 34 G reads650016 15 40 G reads229065 15 40 G reads189732 15 40 T reads499307 15 40 T reads784783 15 40 G reads571079 15 40 T reads462207 15 40 G reads400197 15 40 G reads638050 16 40 G reads849648 16 40 G reads178261 16 40 T reads693646 16 40 G reads403582 16 40 G reads767143 17 40 T reads216278 17 40 T reads566389 17 40 G reads562888 18 40 T reads326568 18 40 T reads382403 18 40 G reads447521 18 40 G reads90561 18 40 T reads468426 18 40 T reads791719 19 40 G reads333103 19 40 G reads842825 19 40 T reads269284 20 40 G reads414782 20 28 G reads207686 20 40 G reads557011 20 40 G reads300027 21 40 G reads258429 22 40 G reads245332 22 40 G reads439304 22 40 G reads177020 23 40 T reads377211 23 40 T reads814198 23 40 G reads469182 25 27 G reads761957 25 37 T reads835546 26 35 G reads395584 26 40 T reads755474 27 37 T reads776538 27 40 G reads708214 29 25 G reads363019 30 35 T reads35645 31 35 G reads120827 31 40 T reads527597 31 40 G reads21429 32 40 T reads366882 33 40 chromsome:ref.fa Polymorphism Sites:1638 NT Read_name Read_site quality score A reads63171 1 40 C reads719682 1 40 A reads548083 1 40 C reads10615 1 40 C reads87610 1 40 A reads205116 1 40 A reads171000 1 40 A reads608552 2 40 A reads806078 2 40 C reads662456 2 40 C reads528749 2 40 C reads299565 2 40 C reads460094 2 40 C reads540689 2 40 A reads89682 2 40 C reads841330 2 40 C reads168044 3 40 C reads81803 3 40 C reads326071 3 40 A reads824348 3 40 C reads171191 3 40 C reads334514 3 40 C reads85669 3 40 C reads216537 3 40 C reads203198 3 40 C reads321643 3 40 A reads735148 3 40 C reads70069 3 40 C reads358463 4 40 C reads33177 4 40 C reads807845 4 40 C reads360753 4 38 C reads241479 4 35 C reads410340 4 40 C reads485627 4 40 A reads93560 4 40 C reads477230 4 40 C reads286446 4 40 C reads641771 5 40 C reads38618 5 40 C reads650637 5 40 C reads720519 5 40 C reads641001 6 40 A reads646713 6 40 C reads519065 6 40 C reads248946 6 40 C reads441407 6 40 C reads229072 6 40 C reads102506 6 40 A reads505690 6 40 C reads826013 7 40 C reads843151 7 40 C reads571338 7 40 C reads556692 7 40 C reads317607 7 40 C reads291285 7 40 C reads819630 7 28 C reads237820 8 40 C reads613488 8 40 A reads496237 8 40 C reads504884 8 40 C reads626792 8 40 C reads245601 8 40 A reads723323 8 40 A reads379561 8 40 C reads96942 8 40 C reads184177 9 40 C reads707593 9 40 C reads210308 9 40 C reads315694 9 40 A reads671401 9 40 C reads529771 10 40 C reads78880 10 40 A reads395173 10 40 C reads383947 10 40 A reads2455 11 40 C reads521170 11 40 C reads359428 11 40 C reads241267 11 40 C reads7577 12 40 C reads139117 12 40 A reads418280 12 40 C reads509807 12 40 C reads376227 12 40 C reads359315 12 40 A reads628062 12 40 A reads141568 13 40 C reads352185 13 40 C reads663159 13 40 C reads349559 13 40 C reads851997 13 40 C reads188359 13 40 C reads528051 13 40 C reads621940 13 40 A reads105934 13 40 A reads210968 14 27 A reads415257 14 40 C reads612966 14 40 C reads568028 14 40 C reads75958 14 40 C reads22208 14 25 C reads754388 15 40 C reads121545 15 40 C reads53368 16 33 C reads763677 16 35 C reads37797 17 40 C reads464502 17 34 C reads145320 17 29 C reads318327 17 40 A reads211691 17 25 A reads172225 17 40 A reads218084 18 40 A reads141030 18 30 C reads49119 18 40 C reads451746 18 40 A reads262388 18 40 C reads707657 19 40 C reads829837 19 40 C reads183670 19 40 C reads550556 19 40 C reads830969 19 40 C reads828719 20 40 C reads538178 21 40 C reads324207 21 40 C reads63334 21 29 A reads116246 21 40 A reads167626 22 40 C reads461106 22 40 C reads275778 24 27 A reads556407 25 25 C reads687306 25 28 C reads188774 25 40 C reads454731 26 36 C reads15210 28 40 C reads825619 30 40 A reads840314 31 40 C reads296532 31 40 C reads184837 32 40 C reads234409 35 40 C reads513802 35 40 C reads41597 35 26 C reads646211 1 40 C reads448545 1 40 C reads526137 1 40 C reads523842 1 40 C reads252120 1 40 chromsome:ref.fa Polymorphism Sites:99956 NT Read_name Read_site quality score G reads667266 1 40 C reads163599 1 40 G reads660353 1 40 C reads724357 1 40 G reads617485 1 40 G reads462896 1 40 G reads109930 2 40 G reads43550 2 40 G reads482801 2 40 C reads424338 2 40 G reads614188 2 27 C reads94084 2 40 G reads571768 2 40 C reads642639 3 40 G reads390628 3 40 C reads834497 3 40 G reads71457 3 40 C reads275324 3 40 C reads57135 3 40 G reads726932 3 40 G reads242788 3 40 C reads618505 4 40 G reads220620 4 40 G reads331035 4 40 C reads310911 4 40 C reads496399 4 40 C reads690483 4 40 C reads230168 4 40 C reads597827 4 40 C reads608533 4 40 C reads840554 5 40 G reads698507 5 40 C reads20256 5 40 G reads692038 5 40 G reads183461 5 40 C reads419143 5 40 C reads132100 5 40 C reads186333 5 40 C reads598993 5 40 G reads479812 6 40 G reads688007 6 40 G reads329805 6 40 G reads23417 6 40 C reads439504 6 40 C reads720628 6 40 C reads750691 7 40 C reads641094 7 40 C reads215454 7 40 G reads759015 7 40 C reads716661 7 40 G reads445561 7 40 G reads325600 7 40 C reads721267 7 40 C reads322556 7 40 C reads211861 7 40 G reads906 8 40 C reads395745 8 40 G reads756397 8 40 C reads228335 8 36 C reads818117 8 40 C reads280741 8 40 C reads506504 8 40 C reads415946 8 40 G reads139293 9 40 C reads832260 9 40 G reads567464 9 40 C reads148614 9 40 G reads271628 9 40 G reads517033 10 40 G reads708324 10 40 C reads645346 10 40 C reads560205 10 40 G reads86511 10 40 C reads841754 10 40 G reads735082 10 40 G reads244065 11 40 C reads632804 11 40 C reads552715 11 40 G reads255801 11 40 G reads481553 11 40 G reads565915 11 40 G reads528010 11 40 G reads681244 11 40 C reads83741 12 40 G reads397870 12 40 C reads625072 12 40 G reads478953 12 40 G reads70248 12 40 C reads535336 12 40 C reads517209 12 40 C reads201732 12 40 G reads34286 13 40 C reads270676 13 33 C reads798776 13 40 G reads139418 13 34 C reads779308 13 40 G reads612801 13 40 C reads31941 14 40 G reads208725 14 40 C reads790490 14 40 G reads362090 14 40 G reads174883 14 40 C reads454007 15 40 G reads34142 15 40 G reads163486 15 40 G reads743019 15 40 G reads544960 15 40 G reads13564 15 40 G reads597885 15 40 G reads845575 16 40 C reads556586 16 40 G reads692127 16 40 G reads699925 17 40 C reads818328 17 40 C reads433016 17 40 G reads546504 18 40 C reads429259 18 40 C reads319139 18 28 C reads59566 18 40 G reads448164 18 40 G reads312825 19 40 C reads726558 19 30 G reads344321 19 40 G reads367013 19 40 G reads674902 19 34 C reads743885 19 40 G reads185665 20 40 G reads361521 20 40 G reads642274 20 40 G reads567676 20 40 G reads757291 21 40 C reads314982 21 40 G reads368427 21 40 C reads246451 21 40 C reads542572 22 40 C reads748504 22 28 C reads750977 22 40 C reads320406 23 33 G reads312827 23 40 C reads801795 23 40 C reads204117 23 40 G reads339987 24 40 C reads115762 24 37 C reads10694 24 27 G reads561087 24 40 G reads186981 26 40 G reads6738 26 34 G reads511850 27 40 C reads544556 27 40 G reads426901 29 40 C reads510805 29 40 G reads624518 31 33 C reads536575 31 40 G reads610662 32 40 G reads51514 34 40 chromsome:ref.fa Polymorphism Sites:1692 NT Read_name Read_site quality score A reads133424 4 40 G reads621274 4 40 G reads792562 4 40 G reads475016 4 40 G reads833492 5 40 G reads513229 5 40 G reads265230 5 40 G reads594701 5 40 G reads582099 5 40 G reads53324 5 40 G reads374791 5 40 G reads48540 6 40 G reads850384 6 40 G reads133265 6 40 G reads278832 6 40 G reads248881 6 40 G reads302976 6 40 G reads249953 6 40 G reads750902 6 40 G reads377795 6 40 G reads584335 7 40 G reads707585 7 40 G reads506147 7 40 G reads585224 7 40 G reads676537 7 28 G reads546952 7 40 G reads597747 7 40 G reads649388 7 40 G reads327713 7 40 G reads524197 7 40 G reads390332 7 40 G reads646591 8 40 G reads727872 8 40 G reads619469 8 40 G reads384150 8 40 G reads172457 8 40 G reads196237 9 31 G reads304301 9 40 G reads78112 9 40 G reads578215 9 40 G reads94146 9 40 G reads469983 9 40 G reads23683 9 40 G reads714470 9 40 G reads218520 9 40 G reads33066 10 40 G reads508119 10 40 G reads135821 10 40 G reads273684 10 40 G reads205818 10 40 G reads856014 10 36 G reads356510 11 40 G reads403203 11 40 G reads695577 11 40 G reads341054 11 40 G reads92695 11 40 G reads588964 11 40 G reads215975 11 40 G reads700473 11 38 G reads512648 11 40 G reads126512 11 40 G reads400587 12 40 G reads275630 12 40 G reads498053 12 40 G reads108023 12 35 G reads41577 12 40 G reads802874 12 40 G reads567471 13 40 G reads800057 13 40 G reads787035 13 40 G reads730218 14 40 G reads849796 14 40 G reads143842 14 40 G reads134544 14 40 G reads244877 14 40 G reads824288 14 40 G reads185923 14 40 G reads665194 14 40 G reads844666 15 40 G reads571731 15 40 G reads77262 15 40 G reads181515 16 35 G reads478214 16 40 G reads540245 16 40 G reads496725 16 40 G reads138757 16 40 G reads250438 16 29 G reads491804 16 34 G reads116986 17 40 A reads115722 17 40 G reads678859 17 40 G reads720472 18 40 G reads299926 18 40 G reads233897 18 40 G reads3844 18 40 G reads325449 18 38 G reads582769 18 40 G reads761905 18 40 G reads418761 18 40 G reads508848 19 35 G reads43989 19 36 G reads120838 19 40 G reads339279 19 40 G reads388756 19 30 G reads327988 19 40 G reads838230 19 37 G reads684067 19 40 G reads446335 19 40 G reads448325 20 40 G reads439704 21 40 G reads491800 21 40 G reads133212 23 28 G reads218540 23 40 G reads417857 23 40 G reads534396 23 40 G reads94097 24 25 G reads622641 24 40 G reads521979 24 40 G reads641310 24 29 G reads784390 25 31 G reads302623 25 40 G reads359754 26 30 G reads71136 26 40 G reads666104 26 40 G reads856974 29 40 G reads695316 30 40 G reads186722 30 40 G reads319364 33 28 G reads156629 35 40 G reads514337 4 40 G reads815240 4 40 G reads297031 4 40 G reads526078 4 40 G reads785188 3 40 G reads329067 3 40 G reads537564 3 40 G reads99134 3 40 G reads431337 3 40 G reads597063 3 40 G reads365107 3 40 G reads195737 2 40 G reads510725 2 40 G reads657449 2 40 G reads738616 2 40 G reads309818 2 40 G reads261932 1 40 G reads188624 1 40 G reads818427 1 40 G reads241313 1 40 G reads173337 1 40 G reads834734 1 40 G reads422853 1 40 G reads120627 1 40 G reads835605 1 40 chromsome:ref.fa Polymorphism Sites:1784 NT Read_name Read_site quality score G reads103860 1 40 C reads415648 1 40 G reads282970 1 40 G reads458287 1 40 G reads395403 1 40 G reads78469 1 40 C reads272064 1 40 G reads281717 2 40 G reads344803 2 40 C reads636255 2 40 G reads852975 2 40 C reads605848 3 40 G reads441751 3 40 C reads816864 3 40 G reads409622 3 40 C reads337910 3 40 G reads305675 4 40 G reads656966 4 40 G reads613384 4 40 G reads185377 4 40 G reads261573 4 40 C reads112794 4 40 C reads367376 4 40 C reads397064 4 40 G reads49729 4 40 G reads487508 5 40 G reads599299 5 40 G reads336540 5 40 C reads90991 5 40 G reads146054 5 40 C reads228155 6 40 C reads813263 6 40 G reads96686 6 40 G reads462341 6 40 G reads688123 7 40 G reads134388 7 40 G reads236882 7 40 G reads173462 7 40 C reads273139 7 40 G reads722416 7 40 G reads854355 8 40 G reads510415 8 40 G reads540633 8 40 G reads92107 9 40 G reads121354 9 40 G reads24737 9 40 G reads548860 9 40 C reads749176 9 40 G reads230858 10 40 G reads685378 10 40 G reads122595 10 40 C reads591840 10 40 C reads822592 10 40 G reads537331 10 26 G reads439653 11 40 G reads9178 11 40 G reads297367 11 40 G reads243853 11 40 G reads708567 11 40 G reads247018 11 40 C reads52650 11 40 G reads480887 12 38 C reads624274 12 40 C reads482303 12 40 C reads516440 12 40 G reads292348 13 33 G reads127384 13 40 C reads664782 13 40 C reads679078 13 40 G reads674033 14 40 C reads294990 14 40 C reads815806 14 40 C reads536877 14 34 C reads308001 14 34 G reads462527 14 40 G reads132919 15 40 C reads735453 15 40 C reads199704 15 40 C reads740445 15 40 G reads502436 15 40 C reads383328 15 40 G reads211023 16 40 G reads828491 16 40 C reads146003 16 35 G reads810004 16 40 C reads817164 16 40 G reads779788 16 40 G reads630503 16 40 G reads330298 17 40 G reads563959 17 40 G reads225095 17 40 C reads323013 17 40 G reads381415 17 40 G reads662611 17 40 G reads401942 17 40 G reads670063 18 31 G reads627567 18 40 G reads318681 18 40 C reads356868 18 40 G reads413223 18 40 C reads259294 18 40 C reads784092 19 40 G reads390129 20 40 C reads23158 20 40 G reads515341 20 40 C reads799319 20 40 G reads391597 20 33 C reads111353 20 40 C reads215259 20 29 C reads767081 20 40 C reads5522 21 40 G reads390894 21 40 C reads33639 21 40 G reads26607 21 40 C reads381644 22 40 G reads455466 22 29 C reads366146 22 39 C reads222421 23 40 G reads509883 23 40 G reads87705 23 40 G reads352633 23 40 G reads419233 24 36 C reads429767 24 40 G reads50440 24 40 G reads201552 25 40 C reads132051 25 40 G reads211935 25 40 G reads119508 26 29 C reads652003 27 29 C reads229032 27 40 G reads450971 28 30 G reads297225 29 40 G reads357235 29 40 G reads274171 30 25 G reads343612 30 26 C reads577647 30 40 G reads397294 31 28 G reads384273 35 31 C reads616732 1 40 C reads407127 1 40 chromsome:ref.fa Polymorphism Sites:1811 NT Read_name Read_site quality score G reads349254 1 40 G reads823804 1 40 G reads21316 2 40 G reads590936 2 40 G reads781393 2 40 G reads225546 2 40 G reads845644 2 40 G reads326312 2 40 A reads547947 2 40 G reads784267 2 40 G reads833931 2 40 G reads258749 2 40 G reads796228 2 40 G reads825314 2 40 G reads697645 3 40 G reads634885 3 40 G reads482066 3 40 G reads421253 3 40 G reads359230 3 40 G reads677429 3 40 G reads560881 3 40 A reads841033 4 40 G reads1800 4 40 G reads217584 4 40 G reads752621 4 40 A reads131363 5 40 G reads667200 5 40 G reads386967 5 40 A reads696371 5 40 G reads269403 6 40 A reads285767 6 40 A reads835714 6 40 A reads46513 6 40 G reads717073 6 40 G reads384551 6 40 G reads156724 6 40 G reads641159 6 40 A reads447125 6 40 A reads118342 6 40 G reads628861 6 40 A reads7499 6 40 A reads281181 6 34 G reads531769 7 40 G reads352822 7 40 A reads91587 7 40 G reads340909 7 40 G reads288398 7 40 G reads631989 7 40 A reads768924 7 40 G reads396594 8 40 A reads218770 8 40 G reads369592 8 40 A reads60032 8 40 G reads691892 8 40 G reads846113 8 40 A reads658104 8 40 G reads332661 8 40 G reads823983 8 40 G reads1311 9 40 G reads564126 9 40 G reads380635 9 40 A reads5385 9 40 A reads71536 9 40 G reads162843 9 40 G reads183323 9 40 G reads618714 10 40 A reads658500 10 40 G reads553515 10 40 A reads851227 10 40 G reads797102 10 40 A reads591314 10 40 G reads829099 10 40 A reads483187 10 40 A reads729220 11 40 A reads595316 11 40 A reads84828 11 40 G reads367042 11 40 A reads743822 11 40 G reads131808 11 40 G reads695937 12 40 G reads313996 12 40 G reads407455 12 40 G reads540427 13 40 G reads258290 13 40 A reads499397 13 40 G reads562248 14 40 G reads226892 14 31 G reads797686 14 40 G reads100989 14 40 A reads655579 14 40 G reads782964 14 40 G reads229450 14 40 A reads84173 14 40 A reads593563 15 40 G reads268788 15 40 A reads303705 15 40 G reads408898 15 40 G reads699763 15 40 G reads448754 16 40 G reads790650 16 40 A reads479109 16 40 G reads449995 17 40 G reads379501 17 40 G reads481300 17 40 G reads412346 17 40 A reads406214 17 40 G reads204631 17 40 G reads185608 18 40 G reads211588 18 40 G reads334713 18 40 G reads767628 18 40 G reads460335 18 40 G reads323259 19 40 A reads578976 19 40 G reads122869 19 40 G reads102283 19 40 G reads729434 20 36 G reads359777 20 40 G reads609475 21 40 A reads633923 21 40 G reads473100 21 40 A reads782073 21 40 G reads421920 22 27 G reads203337 22 34 A reads284060 23 40 G reads763188 23 40 A reads771739 23 40 G reads32321 23 33 G reads156852 23 37 G reads738048 24 30 G reads757837 24 40 G reads200364 24 31 G reads228289 25 40 G reads403619 25 40 G reads78670 25 40 A reads206268 25 40 G reads151151 26 40 G reads87667 27 40 A reads616732 28 40 G reads103860 28 40 A reads415648 28 40 G reads395403 28 40 G reads344803 29 40 G reads49729 31 40 chromsome:ref.fa Polymorphism Sites:1823 NT Read_name Read_site quality score T reads806155 7 40 C reads385370 7 40 C reads168053 7 40 C reads340996 7 40 T reads435961 7 40 C reads430478 8 40 C reads373903 8 40 C reads195084 9 40 C reads733458 9 40 T reads104940 9 40 C reads8 10 40 C reads599083 10 40 C reads712911 10 40 C reads816559 10 31 C reads210848 10 40 C reads802481 10 40 C reads169668 10 40 C reads564758 10 40 C reads86458 10 40 C reads33545 11 40 C reads36450 11 38 C reads439086 11 40 C reads1740 11 40 C reads523653 11 40 C reads560909 11 40 C reads78300 11 40 C reads579533 12 40 C reads606202 12 40 C reads186767 12 40 C reads142464 12 40 C reads851105 12 40 C reads430453 12 40 C reads823804 13 40 C reads590936 14 40 C reads781393 14 40 T reads225546 14 29 C reads845644 14 40 C reads326312 14 40 C reads547947 14 40 C reads833931 14 33 C reads796228 14 40 C reads697645 15 40 C reads634885 15 40 C reads482066 15 40 C reads359230 15 40 T reads677429 15 40 C reads560881 15 39 C reads841033 16 40 C reads1800 16 40 C reads217584 16 40 C reads131363 17 40 T reads269403 18 29 C reads285767 18 40 C reads46513 18 40 C reads717073 18 40 C reads384551 18 40 C reads641159 18 40 C reads118342 18 40 C reads7499 18 40 C reads531769 19 40 C reads352822 19 39 C reads288398 19 40 C reads631989 19 40 C reads768924 19 36 T reads691892 20 40 C reads658104 20 29 C reads823983 20 40 C reads564126 21 36 C reads380635 21 40 C reads5385 21 40 C reads162843 21 40 C reads183323 21 40 C reads851227 22 40 C reads591314 22 40 C reads483187 22 40 C reads743822 23 27 C reads131808 23 40 C reads695937 24 40 C reads499397 25 40 C reads349047 26 35 C reads226892 26 40 C reads797686 26 25 C reads84173 26 40 C reads593563 27 40 C reads303705 27 40 C reads448754 28 40 C reads406214 29 40 C reads767628 30 40 C reads102283 31 40 C reads359777 32 40 C reads771739 35 26 C reads477217 7 40 C reads554615 7 40 C reads735129 7 40 C reads672480 7 40 C reads364730 6 40 C reads501052 6 40 C reads334027 6 40 C reads804249 6 40 C reads111674 6 40 C reads208159 6 40 C reads711220 6 40 C reads551081 6 40 C reads436957 6 40 C reads339774 5 40 C reads565162 5 40 C reads722039 5 40 C reads272853 5 40 C reads526107 4 40 C reads342996 4 40 C reads813358 4 40 C reads432888 4 40 C reads209477 4 40 C reads841681 4 40 C reads251768 4 40 C reads205561 3 40 C reads723706 3 40 C reads303688 3 40 C reads415774 3 40 C reads79894 3 40 C reads371523 3 40 C reads534828 3 40 C reads1238 3 40 C reads640937 3 40 C reads23410 3 40 C reads261868 2 40 C reads751630 2 40 C reads764764 2 40 C reads164953 2 40 C reads612532 2 40 C reads250977 2 40 C reads750174 1 40 C reads305993 1 40 C reads649765 1 40 C reads643506 1 40 C reads87478 1 40 C reads778325 1 40 C reads733897 1 40 C reads615032 1 40 C reads666495 1 40 C reads124825 1 40 C reads377416 1 40 C reads605157 1 40 chromsome:ref.fa Polymorphism Sites:1855 NT Read_name Read_site quality score G reads270759 1 40 A reads439638 1 40 A reads72025 1 40 A reads329264 1 40 A reads568425 2 40 A reads739029 2 40 A reads306441 2 40 A reads247500 2 40 A reads362484 2 40 A reads11501 2 40 A reads382405 2 40 A reads361599 2 40 A reads660271 2 40 A reads431904 3 40 A reads478391 3 40 G reads709047 3 40 A reads76018 3 40 A reads625011 3 40 A reads795901 3 40 A reads158621 3 40 A reads842780 4 40 A reads370574 4 40 A reads86954 4 40 A reads564276 4 35 A reads689415 4 40 A reads611948 4 40 A reads418034 4 40 A reads602335 5 40 A reads163118 5 40 A reads200009 5 40 A reads685603 5 40 A reads298592 5 40 A reads91510 5 40 A reads720532 5 40 A reads659254 5 40 A reads583935 6 40 A reads483212 6 40 A reads636610 6 40 A reads263847 6 40 A reads679953 6 40 A reads23596 7 40 A reads456065 7 32 A reads506786 7 40 A reads233545 8 40 A reads118180 8 40 A reads262358 8 40 A reads301456 8 40 A reads711460 8 40 A reads537534 8 33 A reads456729 8 40 A reads608210 8 40 A reads368188 8 40 A reads541833 8 40 A reads1038 8 40 A reads682794 9 40 A reads584237 9 40 A reads691362 9 40 A reads655449 9 40 A reads184773 9 40 A reads598670 9 40 A reads830933 9 40 A reads295761 9 40 A reads516656 9 40 A reads281520 10 40 A reads532668 10 40 A reads505768 10 40 A reads809972 10 40 A reads815532 10 34 A reads661098 10 40 A reads216922 10 40 G reads768052 10 40 A reads345166 10 40 A reads322649 11 40 A reads723655 11 40 A reads398872 11 40 A reads495531 11 40 A reads698726 11 40 A reads809095 11 40 A reads310009 11 40 A reads660145 11 40 A reads22215 12 40 A reads196993 12 40 A reads452779 12 40 A reads786482 12 40 A reads74339 12 40 G reads448818 12 34 A reads299356 13 40 A reads278116 13 40 A reads702190 13 40 A reads837322 13 40 A reads816489 13 28 A reads579253 13 40 A reads559953 14 40 A reads291356 14 40 A reads16766 14 40 A reads147841 14 40 A reads75733 15 40 A reads37401 15 40 A reads247225 15 40 A reads253905 15 40 A reads53961 15 40 A reads854228 16 40 A reads550750 16 40 A reads508844 16 28 A reads416934 16 40 A reads537628 17 40 A reads742098 17 40 A reads530069 17 40 A reads71768 18 40 A reads694346 18 40 A reads200229 18 40 A reads236689 18 40 A reads346054 18 31 A reads433503 18 40 A reads52690 18 40 A reads731619 19 40 A reads350218 19 40 A reads149925 19 38 A reads741836 19 40 A reads150320 19 40 A reads219556 20 40 A reads553160 20 40 A reads192074 20 28 G reads6186 20 40 A reads49822 21 40 A reads674091 21 40 A reads285134 21 40 A reads855631 22 32 A reads198897 23 40 A reads475963 23 40 A reads389662 24 40 A reads507861 24 40 A reads540841 24 29 A reads214541 24 40 A reads456578 24 40 A reads146149 24 40 A reads330838 24 40 G reads304305 24 34 A reads476476 26 40 A reads743072 29 30 A reads341174 31 40 A reads317324 31 40 A reads602947 32 40 A reads164953 34 40 A reads1238 35 40 A reads534828 35 26 A reads584242 1 40 A reads480635 1 40 A reads191534 1 40 chromsome:ref.fa Polymorphism Sites:1861 NT Read_name Read_site quality score A reads329104 5 40 C reads272776 5 40 C reads701412 5 40 C reads734024 5 40 C reads170070 6 40 C reads127579 6 40 C reads755000 6 40 C reads141149 6 40 C reads455515 6 40 C reads252720 6 40 C reads27765 6 40 C reads699229 6 40 C reads191534 7 40 C reads480635 7 35 C reads584242 7 40 C reads270759 7 40 C reads439638 7 40 C reads72025 7 40 C reads329264 7 40 C reads568425 8 40 C reads739029 8 40 C reads306441 8 40 C reads247500 8 40 C reads362484 8 40 C reads11501 8 40 C reads382405 8 31 C reads361599 8 40 A reads660271 8 40 C reads431904 9 40 C reads478391 9 40 C reads709047 9 40 C reads76018 9 27 C reads625011 9 40 C reads795901 9 40 C reads158621 9 40 C reads370574 10 40 C reads86954 10 40 C reads564276 10 34 C reads689415 10 40 C reads611948 10 40 C reads418034 10 40 C reads602335 11 40 C reads685603 11 40 C reads91510 11 38 C reads720532 11 40 C reads659254 11 40 C reads583935 12 40 C reads483212 12 40 C reads636610 12 40 C reads263847 12 40 C reads679953 12 40 C reads23596 13 40 C reads506786 13 40 C reads233545 14 40 C reads118180 14 40 C reads262358 14 40 C reads711460 14 40 A reads537534 14 40 C reads456729 14 40 C reads368188 14 40 C reads1038 14 40 C reads184773 15 40 C reads598670 15 40 C reads830933 15 26 C reads295761 15 40 A reads516656 15 40 C reads532668 16 40 C reads505768 16 40 C reads809972 16 40 C reads661098 16 40 C reads216922 16 37 C reads345166 16 40 C reads322649 17 40 C reads698726 17 40 C reads809095 17 40 C reads310009 17 36 C reads660145 17 40 C reads22215 18 40 C reads786482 18 40 C reads448818 18 40 C reads299356 19 40 C reads278116 19 38 C reads702190 19 40 C reads837322 19 28 C reads816489 19 27 C reads579253 19 40 C reads559953 20 40 C reads291356 20 40 C reads16766 20 40 C reads37401 21 40 C reads247225 21 40 C reads253905 21 40 C reads53961 21 40 C reads550750 22 40 C reads508844 22 40 C reads687787 23 40 C reads71768 24 40 C reads350218 25 40 C reads535143 25 38 C reads741836 25 40 C reads150320 25 40 C reads553160 26 40 C reads49822 27 40 C reads285134 27 40 C reads507861 30 40 C reads522353 5 40 C reads111236 4 40 C reads511937 4 40 C reads788936 4 40 C reads318313 3 40 C reads572345 3 40 C reads841823 3 40 C reads544488 3 40 C reads409141 3 40 C reads606475 3 40 C reads117463 3 40 C reads518513 3 40 C reads822424 3 40 C reads201062 2 40 C reads115758 2 40 C reads849195 2 40 C reads256004 2 40 C reads282501 2 40 C reads375168 2 40 C reads8288 2 40 C reads628937 2 40 C reads311128 2 40 C reads388272 1 40 C reads37612 1 40 C reads828743 1 40 C reads470990 1 40 C reads613759 1 40 C reads492673 1 40 C reads37645 1 40 C reads584441 1 40 C reads232942 1 40 C reads609996 1 40 chromsome:ref.fa Polymorphism Sites:1876 NT Read_name Read_site quality score C reads478739 6 40 T reads323224 6 40 T reads836173 6 40 C reads602169 6 40 T reads631491 7 40 T reads315188 7 40 T reads611621 7 40 T reads184559 7 40 T reads346197 7 40 T reads564427 7 40 T reads692124 7 40 C reads123605 7 40 T reads47796 7 40 T reads233110 7 40 T reads29456 8 40 T reads521811 8 40 T reads101455 8 40 T reads512853 8 40 T reads542730 8 40 C reads205799 8 40 T reads769993 8 40 T reads470878 8 40 T reads426862 9 40 T reads787923 9 40 T reads7968 9 40 T reads527131 9 40 T reads375250 10 40 T reads717060 10 40 T reads148915 10 40 T reads758076 10 40 T reads187622 10 40 T reads163607 10 40 T reads768947 10 40 T reads467721 10 40 T reads173564 11 40 T reads664842 11 39 T reads312066 11 40 T reads846047 11 40 T reads715912 11 40 T reads148983 11 40 T reads473464 12 40 T reads770211 12 40 T reads378102 12 40 T reads798007 12 40 T reads610547 12 40 T reads345535 12 40 T reads602450 12 40 T reads576305 12 40 T reads511285 12 40 T reads780217 12 40 T reads706449 13 40 T reads277445 13 40 T reads379829 13 40 T reads345155 13 40 T reads820522 13 40 T reads108540 14 40 C reads383717 14 29 T reads442330 14 40 T reads86492 14 40 T reads817097 14 40 T reads813773 14 40 T reads322799 15 40 T reads635276 15 40 T reads383536 15 40 T reads539183 15 40 T reads631614 15 40 T reads609996 16 40 T reads232942 16 40 T reads584441 16 40 T reads37645 16 40 T reads492673 16 40 T reads470990 16 40 T reads828743 16 40 T reads388272 16 40 T reads628937 17 40 T reads375168 17 32 T reads201062 17 40 T reads822424 18 40 C reads409141 18 40 T reads841823 18 40 T reads572345 18 40 T reads318313 18 40 T reads788936 19 40 T reads511937 19 40 T reads522353 20 40 T reads272776 20 40 T reads170070 21 40 T reads127579 21 40 T reads755000 21 28 T reads141149 21 40 T reads191534 22 40 T reads480635 22 40 T reads584242 22 36 T reads270759 22 37 C reads72025 22 40 T reads568425 23 40 C reads306441 23 40 T reads11501 23 27 T reads361599 23 40 T reads660271 23 40 T reads76018 24 40 T reads625011 24 40 T reads795901 24 40 T reads158621 24 27 T reads689415 25 40 T reads659254 26 40 T reads483212 27 40 T reads636610 27 34 T reads233545 29 40 T reads532668 31 40 T reads22215 33 40 T reads579253 34 40 T reads756533 6 40 T reads341873 6 40 T reads10871 5 40 T reads402278 5 40 T reads415961 5 40 T reads789494 5 40 T reads569606 5 40 T reads237550 5 40 T reads632966 5 40 T reads75045 5 40 T reads249109 5 40 T reads678079 4 40 T reads679165 4 40 T reads534614 4 40 T reads87752 4 40 T reads317728 4 40 T reads298151 4 40 T reads696689 4 40 T reads556323 4 40 T reads120164 3 40 T reads782478 3 40 T reads192353 3 40 T reads122325 3 40 T reads378147 3 40 T reads691740 2 40 T reads309991 2 40 T reads821636 2 40 T reads683772 2 40 T reads530999 2 40 T reads239604 2 40 T reads262893 2 40 T reads124025 2 40 T reads40087 2 40 T reads464063 1 40 T reads813497 1 40 T reads536989 1 40 T reads464614 1 40 T reads251579 1 40 T reads382934 1 40 T reads823745 1 40 T reads601478 1 40 chromsome:ref.fa Polymorphism Sites:1884 NT Read_name Read_site quality score T reads707003 1 40 G reads324303 1 40 T reads716218 1 40 T reads280334 1 40 G reads185908 1 40 G reads287019 1 40 T reads457484 1 40 T reads121191 1 40 G reads798155 2 40 G reads114665 2 40 T reads727522 2 40 G reads271823 2 40 G reads826023 2 40 T reads676378 3 40 G reads589553 3 40 T reads769818 3 40 T reads313406 3 40 G reads723428 3 40 T reads490494 3 40 T reads223530 3 40 G reads397645 4 40 T reads110675 4 40 G reads248397 4 40 T reads232090 4 40 G reads62160 4 40 T reads604350 4 40 T reads283983 4 40 T reads323660 5 40 T reads34758 5 40 G reads100954 5 40 T reads369859 5 40 T reads726854 5 40 T reads572725 5 40 G reads770837 5 40 T reads594928 5 40 G reads88160 5 40 G reads104214 6 40 T reads220287 6 40 T reads223421 6 40 T reads89696 6 40 G reads100874 6 40 G reads443398 6 40 T reads153651 6 40 T reads502957 6 40 T reads771249 6 40 T reads249456 6 40 T reads260691 6 40 T reads367003 6 40 G reads278170 7 27 T reads382836 7 40 G reads584987 7 40 T reads255776 8 40 T reads99689 8 40 T reads464707 8 40 T reads844894 8 40 G reads118526 8 40 T reads651245 8 40 G reads662506 8 40 T reads692522 8 40 G reads86701 8 40 T reads601478 9 40 G reads823745 9 40 T reads382934 9 40 G reads464614 9 40 G reads536989 9 40 T reads813497 9 40 T reads464063 9 40 G reads40087 10 40 T reads124025 10 40 T reads262893 10 40 G reads239604 10 40 G reads530999 10 40 G reads683772 10 40 G reads821636 10 40 G reads309991 10 40 G reads691740 10 40 T reads122325 11 40 T reads192353 11 40 T reads120164 11 40 T reads298151 12 40 G reads87752 12 40 T reads534614 12 40 G reads678079 12 40 G reads75045 13 40 G reads237550 13 40 T reads789494 13 40 G reads415961 13 40 T reads10871 13 40 G reads341873 14 40 T reads756533 14 40 T reads478739 14 28 T reads836173 14 40 T reads602169 14 40 T reads315188 15 40 T reads184559 15 40 G reads346197 15 40 T reads564427 15 40 G reads692124 15 40 T reads123605 15 40 G reads47796 15 40 G reads233110 15 40 T reads29456 16 40 T reads521811 16 32 T reads101455 16 40 T reads512853 16 40 T reads542730 16 40 T reads205799 16 40 G reads769993 16 40 T reads426862 17 33 T reads787923 17 32 T reads7968 17 40 T reads758076 18 40 T reads187622 18 40 G reads163607 18 40 G reads467721 18 40 G reads272648 19 40 T reads312066 19 25 T reads846047 19 40 G reads715912 19 40 T reads473464 20 32 T reads770211 20 40 G reads378102 20 40 T reads798007 20 40 T reads345535 20 40 T reads576305 20 40 T reads511285 20 40 T reads780217 20 40 G reads706449 21 26 T reads277445 21 40 G reads379829 21 40 T reads345155 21 40 T reads86492 22 40 G reads813773 22 40 G reads322799 23 40 G reads635276 23 40 T reads383536 23 40 G reads631614 23 31 G reads584441 24 40 G reads37645 24 34 G reads828743 24 40 T reads311128 25 39 T reads628937 25 40 G reads849195 25 30 G reads201062 25 40 T reads511937 27 25 T reads272776 28 40 G reads170070 29 40 G reads795901 32 40 T reads370574 33 35 G reads689415 33 40 G reads196607 1 40 chromsome:ref.fa Polymorphism Sites:1950 NT Read_name Read_site quality score A reads553758 1 40 A reads416680 1 40 G reads567484 1 40 G reads774194 1 40 A reads672103 1 40 G reads19185 1 40 G reads669224 2 40 G reads118021 2 40 G reads112712 2 40 A reads585187 2 40 G reads801086 2 40 G reads418000 2 40 G reads209989 2 40 A reads214896 2 40 A reads326937 3 40 G reads236002 3 40 G reads641606 3 40 A reads607788 3 40 G reads201082 3 40 G reads695475 3 40 G reads243297 3 40 G reads441197 3 40 G reads392660 4 40 A reads349879 4 40 A reads511245 4 40 G reads429264 4 40 A reads761173 4 40 A reads229213 4 40 G reads130250 4 40 A reads648110 4 40 G reads708652 4 40 G reads104177 5 40 G reads554686 5 40 G reads97008 5 40 G reads671131 5 40 G reads71436 5 40 G reads800963 6 40 A reads263949 6 40 G reads477165 6 40 A reads115336 6 40 G reads595524 6 40 G reads717997 6 40 A reads215565 6 40 G reads656786 6 40 G reads353247 6 40 G reads695044 6 40 G reads382120 6 40 G reads209866 6 40 G reads248666 6 40 G reads320200 6 40 G reads698665 6 40 G reads815401 6 40 A reads421042 6 40 A reads463982 6 40 A reads710757 6 40 G reads521842 7 33 G reads794656 7 40 G reads523164 7 40 A reads535688 7 40 G reads30555 7 40 A reads612888 7 40 G reads252379 7 40 G reads360463 7 40 G reads16274 7 40 G reads249637 7 40 G reads662631 8 40 G reads132706 8 40 G reads787429 8 37 G reads779419 8 40 G reads150599 8 40 A reads281522 8 40 G reads590953 8 40 G reads384058 8 40 G reads678409 8 40 G reads19804 8 40 G reads385675 8 40 A reads558307 9 40 G reads379563 9 40 A reads465307 9 40 G reads538993 9 40 G reads725603 9 40 A reads569422 9 40 G reads473487 9 40 G reads811423 9 40 G reads851488 10 40 G reads234542 10 40 G reads492776 10 40 G reads408233 10 40 G reads632428 10 40 G reads715456 10 40 A reads611960 11 40 G reads279401 11 40 A reads521918 11 40 G reads28306 11 40 G reads671200 11 40 G reads99262 11 40 G reads305695 11 40 A reads761871 11 40 A reads300697 12 40 A reads388767 12 40 G reads255231 12 40 G reads566558 12 40 A reads554225 12 40 G reads576491 13 40 A reads552205 13 40 G reads429098 13 40 G reads87066 13 40 G reads409656 13 40 G reads494181 13 40 G reads388680 13 40 A reads49669 13 40 G reads125854 13 40 G reads33970 14 40 G reads454434 14 40 G reads595861 14 40 G reads149685 15 40 G reads202478 15 40 G reads285498 15 40 A reads42756 15 40 G reads71159 15 40 G reads57848 15 38 G reads672400 15 40 G reads465887 15 40 G reads778556 16 40 A reads447099 16 40 G reads752558 16 40 G reads118291 16 40 G reads625525 16 40 G reads824858 17 40 G reads542924 17 40 G reads330164 17 40 G reads743973 17 36 A reads711861 17 40 G reads378106 17 40 G reads362075 17 40 G reads833270 18 40 G reads315010 18 30 G reads496391 18 40 G reads434316 18 40 A reads537115 19 35 G reads355777 19 40 G reads500494 20 40 G reads46496 20 40 G reads805763 20 39 A reads383652 21 40 G reads45798 21 40 G reads444246 21 40 G reads293615 21 40 G reads239285 22 27 A reads127897 22 40 G reads788979 22 39 G reads733358 22 40 G reads548273 23 40 A reads185306 25 40 G reads157140 25 40 G reads42593 26 38 A reads334028 26 40 G reads826450 26 40 G reads271780 27 40 G reads478030 27 40 A reads512791 27 40 G reads646329 27 30 G reads510100 27 40 G reads354007 28 40 G reads539837 28 37 G reads216755 28 40 G reads810850 31 40 G reads220568 31 26 G reads263467 32 40 G reads62687 32 30 A reads104884 33 40 G reads248182 34 40 A reads35399 35 30 G reads370149 1 40 chromsome:ref.fa Polymorphism Sites:2006 NT Read_name Read_site quality score C reads136672 2 40 T reads3554 2 40 T reads605155 2 40 T reads784767 2 40 C reads532068 3 40 T reads164885 3 40 T reads309248 3 40 T reads401284 3 40 T reads527109 3 40 T reads428667 3 40 T reads731367 3 40 T reads123793 4 40 T reads413420 4 40 T reads502621 4 40 T reads171626 4 40 T reads390854 4 40 C reads586553 4 40 T reads103249 5 40 T reads429943 5 40 T reads545121 5 40 T reads853978 5 40 T reads420531 6 40 T reads244581 6 40 T reads646095 6 40 T reads444757 7 40 T reads425618 7 40 T reads343880 7 40 T reads456967 7 40 T reads341325 7 40 T reads375995 7 40 T reads367906 7 40 T reads238163 7 40 T reads81089 8 40 T reads318853 8 40 T reads166756 8 40 T reads300585 8 40 T reads551595 8 27 C reads90300 8 40 T reads220979 8 40 T reads508626 8 40 T reads796606 8 40 T reads687351 8 40 T reads161388 9 40 T reads820339 9 40 T reads514253 9 40 T reads49835 9 40 T reads551012 10 40 T reads138805 10 29 T reads274305 10 40 T reads611233 10 40 T reads480270 10 40 T reads685648 10 40 T reads560248 10 40 T reads603402 10 33 T reads280457 10 40 T reads768922 11 40 T reads818430 11 40 T reads252180 11 40 T reads535851 11 40 T reads236469 11 40 T reads787313 11 40 T reads621297 11 40 T reads621685 11 40 T reads464637 11 40 T reads619552 11 40 T reads626464 11 25 T reads260500 12 40 T reads70612 12 40 T reads233762 12 40 T reads846975 12 40 T reads275165 12 36 T reads798876 12 40 T reads118160 13 40 T reads390100 13 40 T reads836050 13 40 T reads555038 13 38 T reads55726 14 40 T reads464222 14 40 T reads806997 14 40 T reads359573 14 40 T reads76000 14 40 T reads803377 14 40 T reads109099 15 40 T reads41296 15 34 T reads729725 16 40 T reads529118 16 40 T reads259751 16 36 T reads634003 17 40 T reads827920 17 40 T reads203733 18 40 T reads760877 18 40 T reads50061 18 40 T reads580445 19 40 T reads501282 19 40 T reads546650 19 40 T reads852265 20 40 T reads479062 20 40 T reads499729 20 40 T reads588839 20 40 T reads645146 20 40 T reads350250 21 40 T reads343798 21 40 T reads447236 21 40 T reads366548 22 40 T reads114702 22 31 T reads449392 22 25 T reads807704 22 40 T reads248313 23 27 T reads394146 23 40 T reads662024 23 40 T reads388763 23 40 T reads239214 24 29 T reads180128 24 40 C reads121607 24 40 T reads466884 25 40 T reads123443 25 40 T reads5084 26 33 T reads228380 26 40 T reads305884 26 40 T reads619183 27 40 T reads317291 27 40 T reads332030 27 40 T reads661542 30 40 T reads301391 30 31 T reads620255 32 40 T reads447992 33 40 T reads719264 34 40 T reads312989 34 40 T reads781811 2 40 T reads807462 2 40 T reads181684 2 40 T reads215691 2 40 T reads561718 2 40 T reads452617 1 40 T reads693622 1 40 T reads829417 1 40 T reads28339 1 40 T reads355404 1 40 T reads841086 1 40 T reads221487 1 40 T reads295604 1 40 T reads819102 1 40 T reads88119 1 40 T reads380196 1 40 chromsome:ref.fa Polymorphism Sites:2028 NT Read_name Read_site quality score A reads451768 4 40 C reads292513 5 40 C reads738337 5 40 C reads75460 5 40 C reads268699 5 40 C reads381407 5 40 C reads587347 5 40 C reads773290 5 40 C reads626738 5 40 C reads462461 5 40 C reads397411 5 40 C reads756132 6 40 C reads76059 6 40 C reads225328 6 40 C reads837389 6 40 C reads832353 6 40 C reads111414 6 40 C reads516458 6 40 C reads67851 6 40 C reads168906 6 40 C reads495275 6 40 C reads716891 7 40 C reads452747 7 40 C reads186692 7 40 C reads320667 7 40 C reads385894 7 40 C reads591926 7 40 C reads715343 7 40 C reads554919 8 40 C reads287284 8 40 C reads513165 8 40 C reads701449 8 40 C reads674037 8 40 C reads134778 8 40 C reads61951 8 40 C reads724081 8 40 C reads122592 8 40 C reads697873 8 40 C reads823371 9 40 C reads722670 9 40 C reads317216 9 40 C reads208142 9 40 C reads641721 9 40 C reads830814 9 40 C reads283799 9 40 C reads350655 9 40 C reads257132 9 40 C reads429377 10 40 C reads187957 10 40 C reads182359 10 40 C reads435748 10 40 C reads254062 10 40 C reads834297 10 40 C reads497438 10 40 C reads45558 10 40 C reads633335 11 40 C reads304154 11 39 C reads5721 11 40 C reads257376 11 40 C reads351884 11 40 C reads216613 11 40 C reads548352 11 40 C reads854479 12 28 C reads443696 12 40 A reads538602 12 34 C reads827600 12 40 C reads757103 12 40 C reads54148 12 37 C reads745144 12 40 C reads378150 12 40 C reads653263 12 40 C reads774456 13 40 C reads176771 13 40 C reads671863 13 40 C reads189146 14 40 C reads443452 14 40 C reads452324 14 40 C reads572601 14 40 C reads247360 14 40 C reads621967 14 40 C reads155037 14 40 C reads816888 15 34 C reads414849 15 40 C reads608248 15 40 C reads579697 15 40 C reads65163 16 36 C reads116483 17 40 C reads829960 17 40 C reads220457 17 40 C reads13825 17 40 C reads473931 18 40 C reads633101 18 40 C reads465498 18 40 C reads750103 18 40 C reads856461 18 29 C reads461176 18 40 C reads425137 18 40 C reads154818 19 40 C reads296060 19 40 C reads608095 19 40 C reads135752 20 38 C reads179721 20 40 C reads653630 20 40 C reads791622 20 40 C reads228029 21 40 C reads19058 21 40 C reads350162 21 31 C reads472841 21 40 C reads816736 21 40 C reads65054 21 28 C reads770605 22 32 C reads533095 22 37 C reads380196 23 40 C reads295604 23 40 C reads841086 23 31 C reads355404 23 39 C reads215691 24 40 C reads181684 24 34 C reads807462 24 33 C reads136672 24 40 C reads428667 25 32 C reads123793 26 39 C reads502621 26 40 C reads420531 28 40 A reads425618 29 34 C reads49835 31 40 C reads464637 33 40 C reads619552 33 27 C reads846975 34 31 C reads800467 4 40 C reads703960 4 40 C reads587689 4 40 C reads739619 4 40 C reads244319 4 40 C reads191081 3 40 C reads440690 3 40 C reads847847 3 40 C reads508461 3 40 C reads447965 3 40 C reads591161 2 40 C reads457311 2 40 C reads683054 2 40 C reads259418 2 40 C reads238087 2 40 C reads593312 2 40 C reads698052 2 40 C reads617388 2 40 C reads316812 2 40 C reads814834 2 40 C reads496069 2 40 C reads839054 1 40 C reads211407 1 40 C reads258344 1 40 C reads691205 1 40 C reads608734 1 40 C reads3591 1 40 C reads81350 1 40 chromsome:ref.fa Polymorphism Sites:2052 NT Read_name Read_site quality score T reads455291 1 40 T reads426927 1 40 A reads523063 1 40 A reads751012 1 40 T reads608950 2 40 T reads583108 2 40 T reads574243 2 40 T reads477056 2 40 T reads16309 3 40 A reads552649 3 40 A reads762624 3 40 A reads761899 3 40 G reads485300 3 40 T reads537175 3 40 T reads434739 3 40 T reads576245 3 40 A reads115966 3 40 T reads796052 4 40 A reads52948 4 40 T reads99309 4 40 A reads121895 4 40 T reads730204 4 40 T reads837312 4 40 T reads135769 5 40 T reads772091 5 40 T reads544614 5 40 A reads364695 5 40 T reads700464 5 40 A reads696565 5 40 A reads244485 5 40 A reads827086 5 40 T reads518344 5 40 T reads683555 5 40 A reads826655 5 40 A reads825523 6 40 A reads10377 6 40 A reads373583 7 40 T reads532000 7 40 T reads253542 7 40 A reads345168 7 40 A reads525557 8 40 T reads492360 8 40 A reads745173 8 40 T reads289104 8 40 T reads243176 9 40 T reads14483 9 40 T reads331273 9 40 A reads444836 9 40 T reads745462 9 40 T reads267005 9 40 T reads150394 9 40 T reads473400 10 40 T reads244296 10 40 T reads810396 10 40 T reads549870 10 40 T reads367565 10 40 T reads217740 10 40 A reads698062 11 40 A reads562650 11 40 A reads146535 11 40 A reads144528 11 40 A reads762584 11 40 T reads582750 11 40 T reads313746 11 40 A reads505415 11 40 T reads419087 12 40 T reads264735 12 40 A reads182136 12 40 A reads854904 12 40 A reads613920 12 40 T reads435364 12 40 A reads809803 12 40 A reads672298 13 40 T reads297015 13 40 A reads848999 13 40 T reads253563 14 29 T reads17927 14 40 A reads46959 14 40 T reads725262 15 40 A reads783359 15 40 T reads430959 15 40 T reads88746 15 40 T reads557465 15 27 T reads154278 16 40 T reads438421 16 40 T reads55189 17 40 A reads326289 17 40 A reads89175 17 25 A reads701924 17 40 A reads108153 17 40 T reads632781 17 40 T reads287243 18 40 T reads779475 19 40 A reads747180 19 40 A reads824643 19 40 A reads146868 19 40 T reads657608 19 40 T reads330889 19 32 A reads91826 20 40 T reads167707 20 40 T reads809488 20 40 A reads765145 20 40 T reads693474 20 40 T reads18276 21 40 A reads27535 22 40 A reads564935 22 37 A reads475909 22 40 T reads809701 22 40 T reads332884 22 40 A reads423333 23 40 A reads712309 24 35 A reads628871 24 40 T reads81350 25 35 T reads608734 25 40 A reads496069 26 40 A reads814834 26 35 T reads238087 26 37 T reads457311 26 34 T reads447965 27 40 T reads508461 27 40 A reads440690 27 32 A reads191081 27 34 A reads451768 28 37 T reads67851 30 40 T reads168906 30 40 A reads495275 30 30 A reads320667 31 34 T reads674037 32 40 T reads834297 34 40 T reads5721 35 34 T reads257376 35 25 chromsome:ref.fa Polymorphism Sites:2066 NT Read_name Read_site quality score C reads182859 1 40 T reads17965 1 40 C reads233038 1 40 T reads729050 1 40 T reads387418 1 40 C reads429704 2 40 T reads670409 2 40 C reads800246 2 40 T reads175540 2 40 T reads443490 2 40 T reads613138 2 40 C reads13510 2 40 C reads76609 2 40 T reads174719 2 40 C reads112309 3 40 T reads83576 3 39 T reads427405 3 40 C reads85471 3 40 C reads137485 3 40 T reads132048 3 40 T reads321254 3 40 T reads279876 4 40 C reads587735 4 40 C reads568936 4 40 C reads297249 4 40 C reads375196 4 40 C reads171661 4 40 C reads190364 4 40 C reads647504 4 40 C reads30389 4 40 T reads15996 4 40 T reads682286 4 40 C reads721438 4 40 C reads493334 4 40 C reads771994 5 40 C reads717182 5 40 C reads38152 5 40 C reads596223 5 40 T reads376212 5 40 T reads767462 5 40 C reads130961 5 40 C reads377610 5 40 C reads604228 5 40 C reads424171 5 40 C reads708598 5 40 C reads121498 5 40 C reads692617 5 40 T reads389764 5 40 C reads594406 6 40 C reads11207 6 40 T reads664676 6 40 T reads461527 6 40 C reads279988 6 40 C reads758802 6 40 C reads736322 6 40 C reads181907 6 40 T reads351516 6 40 C reads678157 6 40 C reads542086 7 40 T reads676712 7 40 C reads767588 7 40 C reads234719 7 40 C reads496200 7 40 T reads375313 7 40 T reads825957 7 40 C reads55974 7 40 C reads369132 7 40 T reads732762 7 40 C reads68082 7 40 C reads568652 7 40 T reads227642 8 40 C reads824556 8 40 T reads494000 8 40 T reads848199 8 40 C reads633092 8 40 C reads196205 8 40 T reads841421 8 40 T reads175241 8 40 T reads437535 9 40 T reads237493 9 40 T reads178501 9 40 C reads443105 9 40 C reads118705 9 40 T reads648111 10 40 T reads774587 10 40 C reads697461 10 40 T reads323081 10 40 T reads405741 10 39 T reads398883 10 40 T reads613983 11 40 C reads709216 11 40 C reads392363 11 35 T reads771146 11 40 C reads367957 11 40 T reads452541 12 40 T reads466744 12 40 C reads258466 13 40 T reads751289 13 40 C reads444503 13 40 C reads731408 13 40 T reads672428 13 40 C reads553561 14 40 T reads223564 14 40 C reads717522 14 40 C reads628653 14 40 C reads277103 14 39 T reads287474 14 40 C reads426927 15 40 T reads523063 15 40 C reads583108 16 40 C reads574243 16 40 C reads477056 16 40 T reads762624 17 25 T reads761899 17 40 C reads537175 17 40 C reads434739 17 40 C reads576245 17 40 C reads796052 18 40 T reads121895 18 37 C reads730204 18 40 C reads837312 18 40 C reads135769 19 38 C reads772091 19 40 C reads700464 19 40 T reads696565 19 40 T reads826655 19 40 C reads253542 21 40 T reads525557 22 40 C reads492360 22 40 C reads243176 23 40 C reads331273 23 35 C reads745462 23 40 C reads267005 23 40 C reads473400 24 40 C reads810396 24 40 C reads367565 24 40 C reads217740 24 30 T reads146535 25 29 T reads762584 25 40 C reads582750 25 40 C reads313746 25 40 T reads613920 26 40 C reads17927 28 40 T reads783359 29 40 C reads154278 30 40 C reads504581 32 34 C reads287243 32 26 C reads657608 33 40 C reads693474 34 40 T reads118732 1 40 chromsome:ref.fa Polymorphism Sites:2153 NT Read_name Read_site quality score A reads149052 1 40 C reads443790 1 40 A reads832595 1 40 A reads812124 1 40 A reads168664 1 40 C reads687765 1 40 A reads136452 2 40 A reads170480 2 40 A reads31692 2 40 A reads608913 2 40 A reads204580 2 40 A reads256791 2 40 A reads836308 3 40 A reads359031 3 40 C reads10435 3 40 A reads604492 3 40 A reads227195 3 40 C reads198046 3 40 C reads100198 3 40 A reads703309 3 40 C reads13620 3 40 C reads777159 4 40 C reads789672 4 40 A reads71296 4 40 A reads726468 4 40 A reads582082 4 36 C reads50388 5 40 C reads703699 5 40 A reads588518 5 40 A reads767655 5 40 C reads87339 5 40 A reads618459 5 40 A reads26026 5 40 A reads385772 5 40 A reads632745 6 40 A reads389679 6 40 C reads220753 6 40 A reads584643 6 40 C reads379456 6 40 C reads661187 6 40 C reads20983 6 40 C reads70090 6 40 A reads735278 7 40 A reads500288 7 40 C reads73651 7 40 A reads97778 7 31 A reads310333 7 40 A reads260537 7 40 A reads159093 8 40 A reads597758 8 40 A reads590114 8 40 C reads460913 8 35 A reads153464 8 40 A reads163075 9 40 C reads854058 9 40 A reads517015 9 40 A reads335600 9 40 A reads283433 9 40 A reads588229 9 40 A reads66807 10 40 A reads641449 10 40 C reads807353 10 40 A reads64578 10 40 C reads255871 11 40 A reads687681 11 40 C reads841388 11 40 A reads745889 11 40 A reads787879 11 40 A reads285460 11 40 A reads195705 12 40 C reads360029 12 40 C reads562685 12 40 C reads75386 12 40 C reads367033 12 40 C reads19070 12 40 A reads598505 13 40 A reads666372 13 34 C reads220096 13 40 C reads110389 13 40 A reads770396 13 40 C reads854002 13 40 A reads767992 13 40 C reads742410 14 40 A reads841396 14 40 C reads252892 14 40 A reads416696 14 40 A reads49811 14 40 A reads358525 14 40 A reads661126 14 40 A reads530194 14 40 A reads556578 15 40 A reads370490 15 40 A reads371111 16 36 A reads600744 16 40 A reads142731 16 40 A reads4194 16 40 C reads547747 16 40 C reads632410 16 33 C reads648006 17 40 A reads453853 17 40 C reads682575 17 40 A reads826939 18 40 C reads282585 18 40 C reads383325 18 40 A reads117458 18 40 C reads781751 19 40 C reads358273 20 40 C reads230983 20 40 A reads325512 20 38 A reads684909 20 26 C reads648783 21 40 A reads550497 21 40 A reads57254 21 37 A reads219724 22 40 A reads585121 22 40 C reads50956 22 32 A reads761286 22 40 C reads142414 23 40 A reads36904 23 40 A reads86143 24 40 A reads763318 24 40 A reads335517 24 40 A reads246420 25 40 C reads187921 26 40 A reads214133 26 40 A reads430394 27 37 A reads89500 28 40 A reads669845 29 40 A reads564692 30 40 C reads89290 31 40 A reads566335 33 40 chromsome:ref.fa Polymorphism Sites:2189 NT Read_name Read_site quality score G reads272323 2 40 G reads668895 2 40 T reads343775 2 40 T reads141816 3 40 G reads764757 3 40 T reads596314 3 40 T reads684131 3 40 T reads471323 3 40 T reads324273 3 38 G reads720316 3 40 T reads698811 3 40 T reads599081 4 40 T reads498238 4 40 T reads22900 4 40 T reads505288 4 40 T reads321496 4 40 T reads156982 4 40 G reads278163 4 40 G reads829867 4 40 G reads357934 4 40 T reads25899 4 40 T reads610396 4 40 T reads264707 5 40 T reads787186 5 40 T reads830299 5 40 T reads141452 5 40 T reads628215 5 40 T reads143650 5 40 G reads294130 5 40 T reads625222 5 40 T reads518621 6 40 G reads699144 6 40 G reads189587 6 40 T reads550132 6 40 T reads344209 6 40 T reads495733 7 40 G reads223064 7 40 T reads690961 7 40 T reads239603 7 40 T reads61898 7 40 T reads616963 7 40 T reads372579 7 40 T reads328657 7 40 T reads438471 7 40 T reads64058 7 40 T reads228844 8 40 T reads469314 8 40 T reads671661 9 40 T reads705978 9 40 T reads380800 9 40 T reads334317 9 25 T reads811515 9 40 T reads517734 10 40 T reads763913 10 40 T reads672543 10 40 T reads283089 10 40 T reads154000 10 40 T reads16737 10 40 T reads506091 11 31 G reads433522 12 40 G reads746467 12 40 T reads233279 12 36 G reads628311 12 40 T reads54537 13 40 T reads833520 13 40 T reads760251 13 40 T reads190471 13 40 T reads760376 13 40 T reads534797 14 40 T reads209707 14 40 G reads643654 14 40 T reads710813 14 40 G reads352109 14 40 G reads633915 14 40 T reads680673 15 40 T reads253730 15 40 G reads179432 15 40 G reads27444 15 40 T reads93340 16 40 G reads282002 16 40 T reads275344 17 40 T reads807826 17 40 T reads366681 17 40 G reads474540 17 40 G reads234316 17 40 G reads25571 18 40 G reads663213 18 40 T reads597057 18 38 G reads599556 18 29 T reads141892 18 40 G reads24121 18 40 T reads366946 18 40 G reads372112 18 40 T reads440424 18 40 T reads725342 18 26 T reads329915 18 40 G reads738123 19 40 G reads615394 19 40 T reads664038 19 40 T reads119325 19 40 T reads60000 19 40 T reads321305 19 40 G reads153613 20 40 T reads412341 21 40 T reads691694 21 40 T reads119258 21 40 T reads836991 21 40 T reads205272 22 40 T reads630798 22 40 G reads34366 23 40 T reads145718 23 25 G reads242784 23 34 T reads775137 24 40 G reads779916 25 40 T reads583883 26 40 G reads591526 26 39 T reads427979 26 40 T reads381861 27 40 T reads302424 29 40 T reads609494 31 40 T reads807632 31 30 T reads284413 32 31 T reads709360 35 40 T reads488577 2 40 T reads833006 2 40 T reads575970 1 40 T reads786217 1 40 T reads646481 1 40 T reads605098 1 40 chromsome:ref.fa Polymorphism Sites:2196 NT Read_name Read_site quality score T reads354493 5 40 G reads606781 5 40 G reads791511 5 40 G reads34660 6 40 G reads450770 6 40 G reads209998 6 40 G reads43149 6 40 G reads390248 6 40 T reads340121 6 40 G reads53739 7 40 G reads60063 7 40 G reads626504 7 40 G reads289821 7 40 G reads125625 7 40 G reads605098 8 40 G reads646481 8 40 G reads786217 8 40 G reads575970 8 40 G reads833006 9 40 G reads488577 9 40 G reads272323 9 40 G reads668895 9 40 G reads343775 9 40 G reads141816 10 40 G reads764757 10 27 G reads596314 10 40 G reads684131 10 40 G reads471323 10 40 G reads324273 10 33 G reads720316 10 40 G reads698811 10 40 G reads599081 11 40 G reads498238 11 40 G reads22900 11 35 G reads156982 11 40 G reads278163 11 40 G reads829867 11 40 G reads610396 11 40 G reads668877 11 40 G reads264707 12 40 G reads787186 12 40 G reads830299 12 40 G reads141452 12 40 G reads628215 12 40 G reads143650 12 40 G reads294130 12 40 G reads518621 13 40 G reads699144 13 40 G reads189587 13 40 G reads550132 13 40 G reads344209 13 40 G reads223064 14 40 G reads690961 14 40 G reads61898 14 40 T reads616963 14 40 G reads372579 14 25 G reads328657 14 40 G reads64058 14 40 G reads228844 15 26 G reads671661 16 31 G reads705978 16 40 G reads380800 16 40 G reads517734 17 40 G reads672543 17 40 G reads283089 17 35 G reads154000 17 40 G reads16737 17 40 G reads506091 18 40 G reads433522 19 40 G reads746467 19 40 G reads628311 19 33 G reads54537 20 40 G reads833520 20 31 G reads209707 21 39 G reads643654 21 40 G reads710813 21 40 G reads352109 21 33 G reads633915 21 40 G reads680673 22 40 G reads253730 22 40 G reads179432 22 40 G reads27444 22 33 G reads275344 24 33 G reads366681 24 40 G reads474540 24 40 G reads36417 25 40 G reads25571 25 40 G reads597057 25 40 G reads329915 25 40 G reads438619 26 32 G reads153613 27 40 G reads412341 28 40 G reads691694 28 32 G reads427979 33 35 G reads381861 34 26 G reads709251 35 40 G reads306198 5 40 G reads814410 5 40 G reads136669 5 40 G reads591191 4 40 G reads744638 4 40 G reads161417 4 40 G reads193378 4 40 G reads216861 4 40 G reads181763 4 40 G reads78553 4 40 G reads25809 4 40 G reads590641 3 40 G reads497782 3 40 G reads460358 3 40 G reads43471 3 40 G reads93077 3 40 G reads556539 2 40 G reads606323 2 40 G reads141852 2 40 G reads210463 2 40 G reads109711 2 40 G reads697681 2 40 G reads65051 2 40 G reads737237 1 40 G reads458628 1 40 G reads334109 1 40 G reads81928 1 40 G reads585420 1 40 G reads214250 1 40 G reads586982 1 40 G reads719160 1 40 G reads830855 1 40 G reads110385 1 40 G reads653238 1 40 G reads154952 1 40 chromsome:ref.fa Polymorphism Sites:2208 NT Read_name Read_site quality score C reads99061 1 40 C reads558657 1 40 C reads796836 1 40 C reads588887 1 40 C reads75877 1 40 C reads839448 1 40 C reads257199 2 40 C reads211343 2 40 C reads827357 2 40 C reads420691 2 40 C reads665560 3 40 C reads433658 3 40 C reads248803 3 40 C reads335349 3 40 C reads539260 3 40 C reads466434 3 40 C reads592552 3 40 C reads190393 3 40 C reads38969 3 40 C reads481002 4 40 C reads377188 4 40 G reads161832 4 40 C reads658218 4 40 C reads492786 4 40 C reads835625 4 40 C reads468866 4 40 C reads333052 4 40 C reads2272 4 40 C reads811956 5 40 C reads299841 5 40 C reads117005 5 40 C reads694949 5 40 G reads175151 5 40 C reads576802 5 40 C reads330471 5 40 C reads98993 5 40 C reads703921 5 40 C reads543666 6 40 C reads621502 6 40 C reads824687 6 40 C reads426478 6 40 C reads454235 6 40 C reads586537 6 40 C reads489292 6 40 C reads363913 6 40 C reads225687 6 40 C reads801787 6 40 C reads282982 7 27 C reads758314 7 40 C reads303113 7 40 C reads168558 7 40 C reads547159 7 40 C reads591256 7 40 C reads609826 8 40 C reads811034 8 40 C reads380257 8 40 C reads130521 8 40 C reads849318 8 40 C reads439331 8 40 C reads281439 8 40 C reads512015 8 40 C reads508064 8 40 C reads8194 9 40 C reads355932 9 40 C reads388583 9 40 C reads541684 9 40 C reads596764 9 40 C reads118649 9 40 C reads93361 10 40 C reads509054 10 40 C reads698985 10 40 C reads8451 10 40 C reads161358 10 40 C reads189670 10 40 C reads309078 11 40 C reads683551 11 31 C reads120608 11 40 C reads34900 11 40 C reads244677 11 38 C reads502259 11 40 G reads801004 11 40 C reads88219 12 40 C reads795883 12 40 C reads97025 12 40 C reads137976 12 40 C reads155622 12 40 C reads546014 12 40 C reads293366 12 40 C reads771735 12 40 C reads117753 12 40 C reads132296 12 32 C reads154952 13 40 C reads830855 13 40 C reads719160 13 40 C reads214250 13 40 C reads585420 13 40 C reads458628 13 40 C reads737237 13 40 C reads65051 14 40 C reads697681 14 40 C reads210463 14 38 C reads141852 14 40 C reads606323 14 40 C reads556539 14 34 C reads93077 15 39 C reads43471 15 40 C reads497782 15 36 C reads78553 16 40 C reads181763 16 40 C reads216861 16 40 C reads193378 16 40 C reads161417 16 40 C reads591191 16 40 C reads136669 17 40 C reads606781 17 40 C reads34660 18 40 C reads450770 18 40 C reads187839 18 28 C reads209998 18 40 C reads43149 18 40 C reads390248 18 40 C reads340121 18 25 C reads53739 19 40 C reads626504 19 40 C reads646481 20 40 C reads786217 20 40 C reads833006 21 40 C reads488577 21 40 C reads596314 22 40 C reads684131 22 40 C reads498238 23 40 C reads278163 23 30 C reads25899 23 40 C reads264707 24 40 C reads830299 24 40 C reads141452 24 40 C reads628215 24 40 C reads699144 25 40 C reads189587 25 40 C reads239603 26 40 C reads438471 26 40 C reads154000 29 29 C reads27444 34 40 chromsome:ref.fa Polymorphism Sites:2217 NT Read_name Read_site quality score C reads428567 2 40 C reads311424 2 40 C reads90644 2 40 A reads276907 2 40 A reads13832 2 40 A reads751774 2 40 A reads723996 2 40 A reads158167 2 40 A reads744210 3 40 A reads142817 3 40 A reads545936 3 40 A reads759639 3 40 A reads792309 3 40 C reads28604 3 40 A reads638135 4 40 C reads428086 4 40 A reads445024 4 40 A reads305502 4 40 A reads419754 4 40 A reads257894 4 40 A reads442638 4 40 A reads200750 4 40 A reads837953 4 40 A reads77245 5 40 A reads388941 5 40 C reads771426 5 40 A reads16015 5 40 A reads39428 5 40 A reads339359 5 40 C reads593865 5 40 A reads417993 5 40 A reads490866 5 40 A reads18555 5 40 A reads306397 5 40 A reads418212 6 40 C reads122714 6 40 A reads418043 6 40 A reads329304 6 40 A reads718039 6 40 A reads632156 6 40 C reads663657 6 40 A reads107634 6 40 A reads300922 6 40 A reads614746 6 40 C reads656050 6 40 C reads459071 6 40 A reads526852 7 40 A reads562997 7 40 A reads17663 7 40 A reads179318 7 40 A reads363460 7 40 C reads737854 8 40 A reads298601 8 40 A reads683610 8 40 A reads395304 8 40 A reads267691 8 40 C reads548976 8 40 A reads706232 8 40 A reads501217 9 40 C reads102733 9 40 A reads134804 9 40 C reads243125 9 40 C reads714402 9 40 A reads1709 9 40 A reads479631 9 40 A reads331445 9 40 A reads334520 9 40 A reads788833 9 40 A reads99061 10 40 A reads558657 10 40 A reads796836 10 40 A reads588887 10 40 A reads75877 10 40 A reads839448 10 40 A reads91378 11 40 A reads211343 11 40 A reads827357 11 40 A reads420691 11 25 A reads433658 12 40 A reads248803 12 40 A reads539260 12 40 A reads466434 12 40 A reads592552 12 40 A reads38969 12 40 C reads481002 13 40 A reads373718 13 28 A reads658218 13 40 A reads492786 13 40 C reads835625 13 40 A reads333052 13 40 A reads2272 13 40 C reads811956 14 40 A reads299841 14 40 A reads117005 14 31 A reads694949 14 35 A reads175151 14 40 A reads576802 14 40 A reads330471 14 40 A reads98993 14 40 A reads703921 14 40 A reads543666 15 33 C reads621502 15 40 A reads824687 15 40 A reads454235 15 40 A reads586537 15 40 A reads489292 15 40 C reads363913 15 33 A reads225687 15 40 A reads801787 15 40 C reads758314 16 40 A reads168558 16 40 A reads547159 16 40 A reads591256 16 40 A reads380257 17 40 A reads130521 17 40 A reads849318 17 40 C reads512015 17 40 A reads508064 17 40 A reads8194 18 40 A reads388583 18 40 C reads541684 18 40 C reads596764 18 40 A reads93361 19 40 A reads509054 19 30 A reads161358 19 40 A reads189670 19 31 A reads120608 20 30 A reads34900 20 40 A reads801004 20 40 A reads88219 21 40 A reads795883 21 40 A reads97025 21 40 A reads137976 21 31 A reads155622 21 40 A reads293366 21 40 A reads117753 21 40 A reads110385 22 37 A reads719160 22 36 C reads214250 22 40 A reads585420 22 25 A reads737237 22 30 A reads65051 23 26 A reads25809 25 40 A reads78553 25 40 A reads193378 25 30 C reads161417 25 26 A reads591191 25 40 A reads814410 26 29 A reads43149 27 38 A reads53739 28 40 A reads60063 28 40 C reads833006 30 37 A reads668895 30 40 A reads498238 32 33 A reads321496 32 26 A reads156982 32 26 C reads830299 33 40 A reads628215 33 40 A reads223064 35 32 A reads736883 1 40 A reads200587 1 40 chromsome:ref.fa Polymorphism Sites:2276 NT Read_name Read_site quality score C reads835630 1 40 T reads192423 1 40 T reads147352 1 40 T reads644577 1 40 T reads612351 1 40 C reads165543 1 40 C reads334308 1 40 T reads343607 1 40 T reads539244 2 40 T reads720727 2 40 T reads784524 2 40 T reads512024 2 40 C reads564837 2 40 T reads413315 3 39 C reads82251 3 40 T reads573307 3 40 C reads38788 3 40 C reads290539 3 40 C reads475818 3 40 C reads853739 3 40 C reads321252 3 40 C reads838296 3 40 C reads275033 3 40 C reads25538 3 40 C reads80631 3 40 C reads713173 4 40 C reads851764 4 40 C reads838165 4 40 T reads603510 4 40 C reads500613 4 40 C reads477333 5 40 T reads609036 5 40 C reads51963 5 40 T reads150871 5 40 C reads240284 6 40 T reads39500 6 40 T reads778452 6 40 C reads575392 6 34 C reads3015 7 40 C reads285311 7 40 C reads346584 8 40 C reads16172 8 40 T reads677942 8 40 C reads824464 8 40 C reads669333 8 40 C reads390286 8 40 C reads133297 9 40 T reads381395 9 40 T reads287727 9 40 C reads176956 9 40 C reads189921 9 40 C reads84700 9 40 T reads219172 9 37 C reads360177 10 40 T reads238366 10 40 T reads50331 10 40 T reads16660 10 40 T reads417791 10 40 C reads613393 10 40 C reads805293 11 40 C reads335889 11 40 C reads352143 11 40 C reads647808 11 40 T reads651024 12 40 C reads85206 12 40 T reads640309 12 40 T reads472190 12 40 T reads446758 12 31 T reads347595 12 40 C reads459199 12 40 T reads823953 12 40 C reads287977 13 40 C reads172925 13 40 C reads718669 13 40 C reads607583 13 40 T reads100345 14 40 T reads365168 14 40 T reads246896 14 40 T reads736208 14 40 C reads380486 14 40 C reads494387 14 40 C reads303295 14 40 T reads153472 14 40 C reads18922 14 40 C reads641303 15 40 C reads484574 15 35 C reads741593 15 40 T reads542535 15 40 C reads120186 15 40 T reads834163 16 40 C reads453084 16 40 T reads328337 16 40 C reads219090 17 40 T reads199622 17 40 C reads591606 17 40 C reads300491 17 40 C reads382254 18 40 C reads99661 18 40 C reads107600 18 40 C reads555820 18 40 T reads168765 18 40 C reads125012 18 40 C reads842025 18 40 C reads708611 19 40 C reads635564 19 40 C reads456273 19 40 T reads547045 19 36 C reads771562 20 40 T reads25103 20 40 C reads168446 20 40 T reads826215 21 29 T reads555236 21 40 C reads222473 21 40 C reads370665 21 39 C reads785718 21 38 T reads792338 21 40 C reads832500 21 31 T reads690280 22 40 C reads271088 22 40 T reads67111 22 40 C reads702488 22 35 C reads41635 22 40 C reads625931 22 40 C reads30900 22 40 C reads73310 23 30 T reads725750 23 40 C reads681223 23 40 C reads335236 23 40 C reads423005 23 33 T reads301616 24 40 C reads381356 24 40 C reads424064 24 35 T reads120632 24 40 T reads512107 24 40 T reads337254 25 40 T reads685074 25 40 C reads417058 27 40 C reads809191 27 40 C reads524398 28 33 C reads172105 30 40 C reads120037 30 40 C reads546517 32 40 C reads726524 33 40 C reads52177 34 27 T reads252427 35 39 chromsome:ref.fa Polymorphism Sites:2336 NT Read_name Read_site quality score T reads703682 2 40 A reads512963 2 40 A reads547129 2 40 A reads187281 2 40 T reads796880 2 40 A reads640515 2 40 A reads663441 2 40 A reads347574 3 40 A reads9548 3 40 A reads188810 3 40 A reads425864 3 40 A reads367526 3 40 A reads261690 3 40 A reads765948 4 40 T reads233743 4 40 A reads232108 4 40 A reads672024 4 40 A reads234911 4 40 A reads742580 5 40 T reads644430 5 40 A reads724494 5 40 A reads47181 5 40 T reads427365 5 40 A reads532851 5 40 A reads492158 5 40 T reads361185 5 40 A reads203253 5 40 A reads301525 5 40 T reads702271 5 40 T reads841380 6 40 A reads444570 6 40 A reads383781 6 40 A reads507984 6 40 A reads847496 6 40 T reads392725 6 40 A reads244974 7 40 T reads373728 7 40 A reads550106 7 40 A reads719335 7 40 A reads607562 7 40 A reads388831 7 40 A reads206560 7 40 A reads144568 7 40 A reads188911 7 37 A reads466216 7 40 A reads357366 7 40 T reads128375 7 40 T reads343072 7 40 A reads181044 7 40 T reads151628 7 40 T reads405007 7 40 A reads595311 8 40 A reads32541 8 30 A reads688825 8 40 A reads113789 8 40 T reads668847 8 40 A reads829688 8 40 A reads199443 8 40 A reads411404 9 40 A reads530717 9 40 A reads228446 9 40 A reads449383 9 40 A reads202361 9 40 A reads816695 9 40 T reads470422 9 40 A reads828731 10 40 A reads609088 10 40 A reads233309 10 40 T reads766661 10 40 A reads173798 10 40 A reads832469 10 40 T reads1897 10 40 A reads515741 10 40 A reads810452 10 40 A reads295693 10 40 A reads135485 11 40 A reads482806 11 40 A reads758085 11 40 T reads563768 11 40 A reads47489 12 35 A reads117380 12 40 A reads70038 12 40 A reads778699 12 40 A reads658977 12 40 A reads420254 12 40 A reads603734 12 40 A reads118688 12 40 A reads779598 12 40 T reads155375 13 40 T reads311253 13 40 A reads484624 13 40 A reads819100 13 40 A reads740978 13 40 A reads403027 13 40 A reads316893 13 40 A reads398461 14 40 A reads474329 14 40 T reads427301 14 40 A reads357526 14 40 T reads401859 14 40 A reads18271 14 33 A reads337842 14 40 A reads316828 15 40 A reads617330 15 40 T reads7566 15 40 T reads342911 15 40 A reads319755 15 40 A reads43483 16 40 A reads686859 16 40 A reads770786 16 40 A reads799198 17 40 T reads594762 17 40 A reads750268 17 34 T reads675753 17 40 T reads87599 17 40 A reads363031 17 40 A reads154859 17 40 A reads68339 18 40 A reads792738 18 40 T reads815261 18 40 A reads692867 18 40 A reads146566 18 40 T reads803394 18 40 A reads27398 19 40 A reads560459 19 40 T reads534066 20 40 T reads417376 20 40 A reads361157 20 36 A reads477064 20 35 A reads27236 21 40 T reads713529 21 40 A reads627842 21 40 T reads457721 21 35 T reads734098 22 40 A reads308702 22 36 A reads254076 22 40 A reads55297 22 40 A reads217637 23 40 A reads254259 23 40 A reads89775 23 40 A reads303128 24 38 A reads568690 25 40 A reads80498 25 40 A reads303126 26 40 A reads36731 26 40 T reads35079 27 40 A reads511446 29 40 A reads794605 33 40 A reads686 34 40 A reads283543 1 40 A reads416479 1 40 A reads24300 1 40 A reads566592 1 40 A reads173311 1 40 A reads704975 1 40 A reads511929 1 40 chromsome:ref.fa Polymorphism Sites:2392 NT Read_name Read_site quality score C reads806356 1 40 G reads607009 1 40 C reads843289 1 40 C reads18142 1 40 C reads609349 1 40 G reads548063 1 40 C reads798162 1 40 C reads513495 1 40 C reads168115 2 40 C reads450658 2 40 C reads294751 2 40 C reads742568 2 40 C reads812851 2 40 C reads339623 2 40 G reads59322 2 40 G reads857121 2 40 G reads416265 2 40 C reads766333 2 40 G reads557560 2 40 C reads744772 3 40 C reads487779 3 40 C reads833207 3 40 G reads752970 3 40 C reads452229 3 40 C reads67998 4 40 C reads417422 4 40 C reads619176 4 40 C reads814088 5 40 G reads605941 5 40 G reads680001 5 40 G reads505461 5 40 C reads635383 5 40 C reads283444 5 40 C reads638645 5 40 G reads445391 5 40 G reads81797 6 40 C reads555583 6 40 C reads736836 6 40 G reads410575 6 40 C reads726553 6 40 C reads550924 6 40 C reads466458 6 40 C reads223925 6 40 C reads170823 6 40 G reads239085 7 40 G reads197901 7 40 G reads279281 7 40 C reads49354 7 40 C reads340828 7 40 G reads311982 7 40 G reads849502 7 40 G reads527429 7 40 C reads49182 7 40 C reads116028 8 40 C reads222065 8 40 C reads537674 8 40 C reads77016 8 40 C reads459512 8 40 C reads727017 8 40 G reads218919 8 40 C reads460808 9 40 G reads593660 9 40 C reads109603 9 40 G reads354330 9 40 C reads299735 9 40 G reads174730 9 40 C reads661361 9 40 G reads687482 9 40 G reads259790 9 40 G reads240957 9 40 C reads628197 9 40 C reads125292 9 40 G reads645628 9 40 C reads45571 10 40 C reads720818 10 40 C reads430906 10 40 C reads769468 10 40 G reads465074 11 40 C reads545323 11 40 G reads413542 11 40 C reads308789 11 40 C reads535896 11 40 C reads3146 11 40 C reads16791 12 40 C reads155776 12 40 G reads843084 12 25 G reads741445 12 40 G reads845070 12 40 G reads428834 13 40 C reads313146 13 40 C reads236601 13 40 C reads455886 14 40 G reads530542 14 40 C reads19865 14 40 C reads102239 14 40 C reads815705 14 40 C reads251619 15 40 G reads121425 15 40 G reads79808 15 40 C reads469585 15 40 G reads423429 15 40 C reads386807 15 40 G reads121775 15 40 G reads438979 16 40 G reads88919 16 36 G reads378043 16 40 C reads204666 16 40 C reads467282 17 40 C reads546986 17 40 G reads832649 17 40 C reads263621 17 40 C reads48333 17 35 G reads521425 17 29 C reads541718 18 40 G reads24318 18 40 C reads410735 18 40 C reads514165 18 40 C reads640208 18 40 C reads629135 18 40 G reads483013 19 40 G reads442516 19 40 G reads486238 19 40 G reads643068 19 40 G reads812288 19 40 C reads562560 19 30 C reads387075 19 40 C reads346268 20 40 A reads423570 20 29 G reads365182 21 40 C reads176773 21 33 C reads596028 21 40 C reads158374 21 25 C reads252972 21 26 C reads553958 21 26 G reads555769 21 40 C reads574605 22 40 C reads430724 23 30 C reads37151 24 36 C reads531726 25 40 C reads428969 25 40 C reads74954 25 40 G reads609334 25 28 C reads826129 26 40 G reads312260 27 40 G reads517863 28 40 C reads542650 28 40 C reads118210 30 40 G reads227192 31 40 C reads558113 31 40 C reads353305 32 25 G reads659864 34 40 G reads61372 35 31 chromsome:ref.fa Polymorphism Sites:2397 NT Read_name Read_site quality score G reads28228 1 40 T reads379184 1 40 T reads345959 1 40 T reads715036 1 40 T reads274066 1 40 T reads651629 2 40 T reads40856 2 40 T reads169503 2 40 T reads619226 2 40 T reads541751 2 40 T reads241817 2 40 T reads473779 2 40 T reads697316 2 40 T reads515473 2 40 T reads395123 2 40 T reads652211 3 40 T reads733798 3 40 T reads52293 3 40 T reads147472 3 40 T reads176663 3 40 T reads52620 3 40 T reads165975 3 40 T reads559760 3 40 T reads286741 4 40 T reads600304 4 40 T reads87058 4 40 T reads190408 4 40 T reads11045 4 40 T reads91120 4 31 T reads142565 4 40 T reads57698 4 40 T reads643347 4 40 T reads354931 4 40 T reads542181 4 40 T reads198499 5 40 T reads48312 5 40 T reads764699 5 40 T reads404560 5 40 T reads383884 5 40 T reads764206 5 40 T reads479861 5 40 T reads14174 5 40 T reads682181 5 40 T reads806356 6 40 T reads607009 6 40 T reads843289 6 40 T reads18142 6 40 T reads609349 6 40 T reads548063 6 40 T reads798162 6 40 T reads513495 6 40 T reads168115 7 40 T reads450658 7 40 T reads294751 7 40 T reads742568 7 40 T reads812851 7 40 T reads339623 7 40 T reads59322 7 40 T reads857121 7 40 T reads766333 7 40 T reads557560 7 40 T reads744772 8 37 G reads487779 8 40 T reads833207 8 40 T reads752970 8 40 T reads67998 9 40 T reads417422 9 40 T reads619176 9 40 T reads814088 10 40 T reads605941 10 40 T reads505461 10 38 T reads635383 10 40 T reads283444 10 40 T reads638645 10 40 T reads445391 10 40 T reads81797 11 40 T reads555583 11 40 T reads736836 11 40 T reads410575 11 40 T reads726553 11 40 T reads550924 11 40 T reads466458 11 40 T reads223925 11 40 T reads170823 11 40 T reads239085 12 40 T reads197901 12 40 T reads279281 12 40 T reads49354 12 40 T reads340828 12 40 T reads311982 12 40 T reads849502 12 40 T reads527429 12 40 T reads116028 13 40 T reads77016 13 40 T reads459512 13 40 T reads218919 13 30 T reads460808 14 40 T reads109603 14 32 T reads354330 14 40 T reads299735 14 40 T reads661361 14 40 T reads259790 14 40 T reads628197 14 40 T reads645628 14 27 T reads45571 15 40 T reads720818 15 40 T reads430906 15 37 T reads465074 16 40 T reads545323 16 40 T reads308789 16 40 T reads535896 16 31 T reads155776 17 40 T reads741445 17 40 T reads845070 17 40 T reads428834 18 40 T reads313146 18 40 T reads236601 18 35 T reads530542 19 40 T reads19865 19 40 T reads102239 19 40 T reads815705 19 40 T reads79808 20 40 T reads423429 20 40 T reads386807 20 38 T reads50117 21 40 T reads438979 21 40 T reads378043 21 34 T reads204666 21 40 T reads184828 22 40 T reads48333 22 40 T reads633591 22 40 T reads521425 22 40 T reads541718 23 40 T reads24318 23 40 T reads410735 23 40 T reads629135 23 34 T reads486238 24 40 T reads643068 24 40 T reads812288 24 40 T reads562560 24 39 T reads387075 24 40 T reads346268 25 40 T reads553958 26 40 T reads463367 26 36 T reads555769 26 32 T reads574605 27 40 T reads430724 28 40 T reads517863 33 40 T reads542650 33 40 T reads118210 35 40 T reads459353 1 40 T reads479290 1 40 chromsome:ref.fa Polymorphism Sites:2450 NT Read_name Read_site quality score C reads232782 19 40 C reads651130 19 40 C reads100924 19 40 C reads18132 19 32 C reads843274 20 33 C reads338739 20 40 C reads638808 20 40 C reads663435 20 40 C reads848284 20 40 C reads661236 20 40 C reads750354 21 35 C reads706377 22 40 C reads387760 22 40 C reads763490 22 40 A reads591703 22 40 C reads736086 23 40 C reads857086 23 40 C reads254464 25 40 C reads616945 25 40 A reads2713 25 40 C reads675032 26 40 C reads247159 26 28 C reads245865 26 28 C reads709782 26 40 C reads584611 26 39 C reads128481 28 33 C reads257451 28 31 C reads265349 30 32 C reads736377 31 29 C reads509646 31 40 C reads772123 32 40 C reads142528 18 40 C reads839190 18 40 C reads368553 18 40 C reads182001 17 35 C reads502271 17 40 C reads349008 17 40 C reads366330 16 40 C reads667567 16 29 C reads638304 16 40 C reads171463 15 40 C reads285319 15 29 C reads620560 14 40 C reads321086 14 40 C reads410762 14 40 C reads735846 14 40 C reads320751 14 40 C reads2708 14 40 C reads451173 14 40 C reads651778 14 40 C reads380838 14 40 C reads154786 13 40 C reads764573 13 40 C reads682956 12 40 C reads93648 12 40 C reads163797 12 40 C reads133723 12 40 C reads824295 12 31 C reads275359 12 40 C reads362381 12 40 C reads587892 12 40 C reads705125 12 40 C reads410259 11 40 C reads595082 11 40 C reads848708 11 40 C reads396065 10 30 C reads103923 10 40 C reads68801 10 40 C reads748065 10 40 C reads796076 10 40 C reads504097 10 40 C reads354229 9 40 C reads688493 9 40 C reads400954 9 40 C reads13719 9 40 C reads490553 9 40 C reads157738 9 40 C reads299003 9 40 C reads260738 9 40 C reads226425 9 40 C reads125788 9 40 C reads71485 8 40 C reads376980 8 34 C reads476530 8 40 C reads310598 8 40 C reads713822 8 40 C reads424266 8 40 C reads321779 8 40 C reads203005 7 40 C reads600089 7 40 C reads169498 7 40 C reads507817 7 40 C reads502469 7 40 C reads191803 7 40 C reads615639 6 40 C reads431116 6 40 C reads576846 6 40 C reads246574 6 40 C reads132569 6 40 C reads281738 6 40 C reads808999 6 40 C reads81085 6 40 C reads559493 5 40 C reads98606 5 40 C reads207763 5 40 C reads775333 5 40 C reads215857 4 40 C reads497989 4 40 C reads798645 4 40 C reads176753 4 40 C reads652548 4 40 C reads628576 4 40 C reads61154 4 40 C reads189996 4 40 C reads270332 4 40 C reads253645 4 40 C reads561773 4 40 C reads298143 3 40 C reads712251 3 40 C reads417012 3 40 C reads83632 3 40 C reads491939 3 40 C reads493107 3 40 C reads99300 3 40 C reads293794 2 40 C reads321682 2 40 C reads210046 2 40 C reads571650 2 40 C reads185560 2 40 C reads603446 2 40 C reads351805 1 40 C reads640321 1 40 C reads291177 1 40 C reads90373 1 40 C reads110701 1 40 C reads781477 1 40 C reads7077 1 40 C reads52628 1 40 C reads377288 1 40 chromsome:ref.fa Polymorphism Sites:2483 NT Read_name Read_site quality score T reads781345 1 40 T reads795430 1 40 G reads109380 2 40 G reads314240 2 40 G reads112057 2 40 G reads11810 2 40 G reads349191 2 40 T reads819811 2 40 G reads745735 2 40 G reads566734 2 40 G reads231692 2 40 G reads664888 3 40 G reads592695 3 40 G reads164436 3 40 G reads189738 3 40 G reads540163 3 40 G reads671399 3 40 G reads592203 3 40 G reads551630 3 40 G reads800275 4 40 G reads608266 4 40 G reads535283 4 40 G reads163730 4 40 G reads761902 4 40 T reads720972 4 40 G reads781824 4 40 G reads758207 4 40 G reads541066 4 40 G reads719024 5 40 G reads559134 5 40 T reads364204 5 40 G reads437544 5 40 G reads660005 5 40 G reads513665 5 40 G reads807221 5 40 G reads775709 5 40 G reads817765 6 40 T reads401987 6 40 G reads491386 6 40 G reads3032 6 40 G reads641759 6 40 G reads152864 6 40 G reads675987 6 40 G reads470242 7 40 G reads598026 7 40 G reads613530 7 40 G reads464635 7 40 G reads384640 7 40 G reads232232 7 40 T reads60919 7 40 G reads670336 7 40 T reads855213 7 40 G reads97764 8 40 G reads820335 8 40 G reads4029 8 40 G reads634391 8 40 G reads239111 8 40 G reads458401 8 40 G reads226512 8 40 G reads809534 9 40 G reads418521 9 40 G reads18484 9 40 T reads657662 9 40 G reads182812 9 40 G reads843096 9 40 G reads150422 9 40 G reads664365 9 40 G reads521859 10 40 T reads136872 10 40 G reads127039 10 40 T reads622607 10 40 G reads462087 10 40 T reads680834 10 40 G reads461975 10 40 T reads554347 10 40 G reads842443 10 40 T reads418450 11 40 G reads302163 11 40 G reads20453 11 40 G reads57932 11 40 G reads290497 11 40 G reads256690 12 40 G reads198114 12 40 G reads541837 12 40 G reads164765 13 40 T reads341253 13 40 G reads739405 13 29 G reads370406 13 40 G reads841687 13 40 G reads270218 14 38 G reads239659 14 40 G reads410191 14 40 G reads804673 14 40 G reads137768 14 40 G reads599488 15 40 G reads378791 15 40 G reads346924 15 40 T reads236381 16 40 G reads172041 16 40 G reads638581 16 40 G reads694599 16 40 T reads259165 17 40 G reads748173 17 40 G reads68415 17 40 G reads73981 17 40 T reads487112 17 40 G reads263176 17 40 G reads683633 18 40 G reads427619 18 40 G reads154345 18 40 G reads98791 19 40 G reads380621 20 40 G reads697240 20 40 G reads395302 20 40 T reads82762 20 40 G reads365330 21 33 G reads132367 22 31 G reads845981 22 37 G reads669664 23 25 T reads20111 23 40 G reads511464 23 40 G reads568285 23 40 G reads380790 24 40 G reads312058 24 40 G reads495254 25 40 G reads812018 25 36 G reads282666 25 40 G reads303647 26 35 G reads647257 26 40 G reads212901 26 26 G reads104753 26 33 G reads260968 28 40 G reads657640 28 40 T reads815849 28 40 G reads854159 32 40 G reads599736 32 40 G reads449718 33 40 G reads308051 33 29 T reads368586 33 31 G reads181404 1 40 G reads575115 1 40 G reads161263 1 40 G reads552457 1 40 G reads324752 1 40 chromsome:ref.fa Polymorphism Sites:2506 NT Read_name Read_site quality score A reads488918 2 40 A reads680967 2 40 T reads45473 2 40 T reads639092 3 40 T reads406934 3 40 T reads653 3 40 T reads570533 3 40 T reads671834 3 40 A reads27022 3 40 T reads647980 3 40 A reads637018 3 40 T reads730806 3 40 T reads842948 4 40 T reads787728 4 40 T reads810108 4 40 T reads384937 5 40 A reads620907 5 40 T reads226659 5 40 T reads654477 5 40 T reads117491 5 40 T reads448069 5 40 T reads150720 5 40 T reads558219 6 40 T reads742523 6 40 T reads61395 6 40 T reads520470 6 40 T reads191022 6 40 T reads239952 6 40 T reads562113 6 40 T reads99945 6 40 T reads473810 6 40 T reads644118 6 40 T reads331438 7 40 A reads379595 7 40 T reads424643 7 40 A reads591119 7 40 A reads38560 7 40 A reads534463 7 40 T reads399491 7 40 T reads594223 7 40 T reads605483 7 40 T reads691102 7 40 T reads546887 8 36 T reads797538 8 40 A reads111731 8 40 T reads365850 8 40 A reads650423 8 27 T reads15665 8 40 T reads328077 8 40 A reads62304 8 38 T reads739065 9 40 T reads687828 9 40 A reads111181 9 40 T reads534618 9 40 T reads195022 9 40 T reads676817 9 40 T reads406847 9 40 T reads765655 9 40 T reads492368 9 40 T reads299431 10 40 T reads637602 10 40 T reads413199 10 40 T reads177072 10 40 T reads322094 10 40 A reads712734 10 40 T reads144639 11 40 T reads445089 11 40 T reads395824 11 40 A reads610496 11 40 T reads452583 11 40 T reads358523 11 40 T reads592769 12 40 A reads111358 12 40 T reads718906 12 40 T reads352856 12 40 A reads672794 12 40 T reads671742 12 40 T reads497135 13 40 T reads598109 13 40 T reads516413 13 40 T reads331922 13 40 A reads377986 13 40 T reads734814 13 40 T reads317187 13 40 T reads516857 13 40 T reads822518 14 40 T reads774448 14 40 T reads742930 14 40 T reads189764 14 40 A reads792939 14 40 T reads722112 15 27 A reads432103 15 28 T reads747335 15 40 A reads423589 15 40 A reads249910 15 40 T reads775956 15 40 A reads845860 15 40 T reads290689 16 40 A reads451903 16 40 T reads620557 16 40 T reads728905 16 40 T reads539374 16 40 T reads97658 16 30 T reads422428 16 40 T reads515285 16 40 T reads736992 17 40 T reads5087 17 35 A reads182890 17 40 T reads219201 17 40 T reads8280 17 40 T reads828189 17 40 T reads383772 18 40 T reads89320 18 40 T reads378577 18 40 T reads257094 18 40 A reads94769 19 28 T reads493468 19 40 T reads659101 19 40 T reads115544 19 40 T reads78008 19 27 T reads295677 19 40 T reads275158 19 40 T reads200269 20 38 T reads812937 20 40 T reads45988 21 30 T reads727690 21 40 A reads289319 22 40 T reads413934 22 40 T reads72569 23 40 T reads669470 23 29 T reads70363 23 35 T reads532631 23 40 T reads552457 24 40 A reads161263 24 40 A reads781345 24 33 T reads314240 25 40 A reads819811 25 39 T reads566734 25 40 T reads664888 26 40 T reads592203 26 40 T reads761902 27 40 T reads232232 30 40 T reads198114 35 40 T reads167616 2 40 T reads785368 2 40 T reads474857 2 40 T reads163175 2 40 T reads834077 2 40 T reads841564 2 40 T reads557555 1 40 T reads545666 1 40 T reads55533 1 40 T reads584801 1 40 T reads506059 1 40 T reads468046 1 40 T reads478933 1 40 chromsome:ref.fa Polymorphism Sites:2527 NT Read_name Read_site quality score A reads450655 9 40 G reads761911 9 40 G reads255505 9 40 G reads760866 9 40 G reads571099 10 40 G reads688983 10 40 G reads680958 10 40 G reads369454 10 40 G reads564964 10 27 G reads446203 10 40 G reads74508 10 40 G reads454764 10 40 G reads299245 10 40 G reads372286 10 40 G reads307647 11 40 G reads481617 11 40 G reads501279 11 40 G reads204388 11 40 A reads64859 11 40 G reads374456 11 40 G reads76105 11 40 G reads113280 11 40 G reads362480 11 40 G reads308881 12 40 G reads482048 12 40 G reads518149 12 40 G reads198340 12 40 G reads477228 12 33 G reads408383 13 40 G reads844993 13 40 G reads812557 13 40 G reads633896 13 40 G reads205049 13 32 G reads795359 14 40 G reads334765 14 32 G reads67842 14 40 G reads38036 14 40 G reads565781 14 40 G reads633798 15 40 G reads154602 15 40 G reads64327 15 40 G reads109386 15 40 G reads429755 16 40 G reads177640 16 40 G reads531685 16 40 G reads295145 16 35 G reads212108 17 40 G reads798529 17 40 A reads767162 17 40 G reads606295 17 40 G reads606810 17 40 G reads390847 17 40 G reads623548 18 35 G reads480045 18 40 G reads134467 18 40 G reads593440 18 40 G reads142253 18 40 G reads103077 19 29 G reads33182 19 40 G reads594555 19 40 G reads159441 19 40 G reads117278 19 40 G reads333547 19 40 G reads660337 19 40 G reads48035 20 40 G reads815188 20 40 G reads464389 20 40 G reads660173 21 32 G reads155165 21 28 G reads297615 21 40 G reads478933 22 33 G reads584801 22 40 G reads545666 22 40 G reads167616 23 39 G reads680967 23 40 G reads406934 24 40 G reads570533 24 40 G reads637018 24 40 G reads787728 25 36 G reads810108 25 40 G reads117491 26 40 G reads558219 27 40 G reads520470 27 40 G reads191022 27 40 G reads644118 27 40 G reads365850 29 31 G reads299431 31 40 G reads413199 31 33 G reads610496 32 40 G reads452583 32 40 G reads693048 33 40 G reads331922 34 31 G reads792939 35 30 G reads554332 9 40 G reads666071 9 40 G reads797155 8 40 G reads99277 8 40 G reads232331 8 40 G reads416985 8 40 G reads820684 8 40 G reads759517 8 40 G reads178431 7 40 G reads53575 7 40 G reads340453 7 40 G reads438120 7 40 G reads781696 7 40 G reads116981 6 40 G reads347734 6 40 G reads296551 6 40 G reads660164 6 40 G reads36836 6 31 G reads408636 6 40 G reads715976 5 40 G reads570061 5 40 G reads375868 5 40 G reads685118 4 40 G reads705306 4 40 G reads258970 4 40 G reads304980 4 40 G reads244872 4 40 G reads406766 4 40 G reads341663 3 40 G reads227407 3 40 G reads463654 3 40 G reads225552 3 40 G reads115683 3 40 G reads710313 3 40 G reads726963 2 40 G reads199370 2 40 G reads161084 2 40 G reads578424 2 40 G reads348126 2 40 G reads139545 2 40 G reads763060 1 40 G reads182378 1 40 G reads634410 1 40 G reads741924 1 40 G reads643608 1 40 chromsome:ref.fa Polymorphism Sites:2725 NT Read_name Read_site quality score C reads204496 17 40 G reads808728 17 40 G reads303877 17 40 G reads430618 17 40 G reads156062 18 40 G reads260213 18 40 G reads6830 18 40 G reads377954 18 40 G reads281476 18 40 G reads434469 19 40 G reads340253 19 40 G reads730866 19 40 G reads741735 19 40 G reads229010 20 35 G reads498502 20 40 G reads688600 20 40 G reads619434 20 25 C reads522766 21 36 G reads810599 21 40 G reads43513 22 40 G reads31646 23 39 G reads501627 23 40 G reads281140 23 40 G reads753350 23 29 G reads284848 24 40 G reads721726 24 40 G reads95729 26 40 G reads215406 27 40 G reads594682 28 40 G reads619845 31 34 G reads747609 31 30 G reads695835 33 40 G reads380497 34 40 G reads398600 35 40 G reads639499 17 40 G reads298990 16 40 G reads182679 16 40 G reads189484 16 40 G reads567145 16 40 G reads340297 16 40 G reads664765 16 40 G reads91459 16 40 G reads718065 16 40 G reads249377 15 40 G reads241045 15 27 G reads434168 14 29 G reads27948 14 40 G reads699592 13 40 G reads592130 13 40 G reads419369 13 40 G reads354571 13 40 G reads319304 13 40 G reads479357 12 40 G reads763151 12 40 G reads362945 12 40 G reads56318 12 40 G reads209879 12 40 G reads83839 12 31 G reads798434 12 40 G reads227061 12 32 G reads765299 11 40 G reads328444 11 40 G reads247961 11 40 G reads397040 11 40 G reads545394 11 40 G reads196359 10 40 G reads818046 10 40 G reads712445 10 40 G reads9995 10 40 G reads678884 9 40 G reads159718 9 40 G reads172463 9 40 G reads363938 8 40 G reads112059 8 40 G reads238197 8 40 G reads805515 8 40 G reads42135 8 40 G reads188029 8 40 G reads454090 8 40 G reads856977 7 40 G reads65238 7 40 G reads537205 7 40 G reads704108 7 40 G reads633795 7 40 G reads549533 7 40 G reads249710 6 40 G reads600707 6 40 G reads305761 6 40 G reads33731 6 40 G reads734206 6 40 G reads365086 6 40 G reads69621 6 40 G reads116716 6 40 G reads81557 5 40 G reads454265 5 40 G reads661564 5 40 G reads102812 5 40 G reads105264 5 40 G reads65712 5 40 G reads188918 5 40 G reads559862 5 40 G reads264621 5 40 G reads332210 5 40 G reads675040 5 40 G reads378849 4 40 G reads399124 4 40 G reads229990 4 40 G reads68882 4 40 G reads534961 4 40 G reads559789 3 40 G reads699149 3 40 G reads137326 3 40 G reads253066 3 40 G reads825944 3 40 G reads68316 3 40 G reads380967 3 40 G reads167527 2 40 G reads96032 2 40 G reads250200 2 40 G reads350868 1 40 G reads772258 1 40 G reads216673 1 40 G reads714910 1 40 G reads208762 1 40 G reads148732 1 40 G reads585060 1 40 G reads525844 1 40 G reads609832 1 40 G reads23003 1 40 G reads15958 1 40 G reads409606 1 40 chromsome:ref.fa Polymorphism Sites:2815 NT Read_name Read_site quality score C reads605144 2 40 T reads775690 2 40 C reads91891 2 40 T reads151493 2 40 T reads781855 2 40 T reads657085 2 40 T reads14773 2 40 T reads273555 2 40 T reads816042 2 40 T reads92815 3 40 C reads620987 3 40 T reads193052 3 40 T reads775694 3 40 T reads197377 3 38 T reads611614 3 40 T reads514118 3 40 T reads269882 3 40 T reads573899 3 40 T reads194659 4 40 T reads258453 4 40 T reads681489 4 40 T reads161554 4 40 T reads741486 4 40 T reads390990 4 40 T reads304825 4 40 C reads71414 4 40 T reads254872 4 40 T reads209609 5 40 T reads280929 5 40 C reads365722 5 40 T reads149238 5 40 T reads94573 5 40 T reads580083 5 40 T reads592747 5 40 T reads195518 5 40 T reads6713 5 40 T reads626881 5 40 C reads452899 5 40 T reads588472 5 40 T reads564193 6 40 T reads536304 6 40 T reads135898 6 40 T reads837440 6 40 T reads778885 6 40 T reads303785 6 40 T reads177549 6 40 T reads247147 6 40 T reads690834 6 40 T reads76121 6 40 T reads829163 7 40 T reads522150 7 40 T reads76156 7 40 T reads19003 7 40 T reads799971 7 40 T reads678484 7 40 T reads120320 7 40 T reads631835 7 40 T reads697776 7 40 T reads260596 8 40 T reads217514 8 40 T reads187457 8 40 T reads394875 8 40 T reads549933 8 40 T reads612459 8 26 T reads181839 9 40 T reads394077 9 40 T reads610207 9 40 T reads619538 9 40 T reads626170 9 40 T reads426729 9 40 C reads757755 9 40 T reads795734 10 40 T reads2147 10 40 T reads455770 10 40 T reads123192 10 40 T reads645056 10 40 T reads83076 10 40 T reads445124 10 40 C reads89577 10 40 T reads43981 10 40 T reads193867 11 40 T reads591321 11 40 T reads821672 11 35 T reads844779 11 40 T reads589115 11 37 T reads770992 12 40 T reads532451 12 40 T reads430521 12 40 T reads621107 12 40 C reads18163 12 40 T reads380435 12 40 T reads274470 12 40 T reads379386 13 40 T reads561578 13 40 T reads496828 13 37 T reads372244 13 40 T reads582227 13 40 T reads525763 13 40 T reads174348 13 40 T reads52362 13 40 T reads54717 13 40 T reads189538 14 40 T reads238379 14 40 T reads736541 14 40 T reads715261 14 40 T reads807082 15 40 T reads527332 15 40 T reads853411 16 40 T reads19911 16 40 T reads629082 17 40 T reads750673 17 40 T reads237274 17 40 T reads605199 18 40 T reads769087 18 40 T reads248966 18 40 T reads711580 19 40 C reads612897 19 40 T reads340537 19 33 T reads693134 19 35 T reads32474 19 34 T reads36573 19 39 T reads14961 19 40 T reads231591 20 40 T reads792866 21 30 T reads459302 21 34 T reads778296 21 35 T reads566404 22 40 T reads224004 22 40 T reads340312 23 40 T reads221537 23 36 T reads491096 24 40 C reads384470 24 40 T reads645340 25 40 T reads248068 25 40 T reads850437 26 40 T reads514862 26 40 T reads336164 26 40 T reads100497 27 40 C reads268291 27 27 T reads189229 27 40 C reads214931 28 36 T reads85368 28 40 T reads219165 29 34 T reads807006 30 25 T reads594953 30 40 T reads104678 31 40 T reads34037 31 40 T reads301297 33 40 T reads266247 34 40 T reads344076 35 33 T reads154659 2 40 T reads520220 1 40 T reads309813 1 40 T reads361880 1 40 T reads856909 1 40 T reads249944 1 40 T reads99981 1 40 T reads64229 1 40 chromsome:ref.fa Polymorphism Sites:2824 NT Read_name Read_site quality score T reads620049 1 40 T reads846206 1 40 T reads855950 1 40 T reads366072 1 40 T reads680475 1 40 C reads226414 1 40 C reads75104 1 40 C reads454794 2 40 T reads73344 2 40 T reads793875 2 40 C reads362694 3 40 T reads228549 3 40 T reads383296 3 40 T reads555672 3 40 T reads815865 3 40 T reads242416 3 40 T reads23338 4 40 C reads599775 4 40 C reads303754 4 40 T reads379021 4 40 T reads366790 4 40 T reads573020 4 40 C reads478445 4 40 T reads654130 4 40 C reads683877 4 40 C reads687730 4 40 C reads77509 4 40 T reads546962 5 40 T reads126071 5 40 T reads214722 5 40 T reads454155 5 40 T reads759523 5 40 C reads151449 6 40 T reads297131 6 40 T reads164805 6 40 C reads556017 6 40 C reads359179 6 40 T reads803216 6 40 T reads283585 6 40 T reads619797 6 40 T reads317243 7 40 T reads745971 7 40 T reads129363 7 40 T reads425972 7 40 C reads711336 7 40 T reads275409 7 40 T reads825402 7 40 T reads82724 7 40 C reads12976 7 40 T reads815924 7 40 T reads660208 8 40 C reads22369 8 40 T reads429593 8 40 T reads170864 8 40 C reads517019 8 40 T reads502367 8 40 T reads280588 9 40 T reads263579 9 40 T reads333007 9 40 T reads189631 9 40 C reads99981 10 37 T reads249944 10 40 C reads856909 10 40 C reads361880 10 40 C reads309813 10 40 T reads520220 10 40 C reads775690 11 40 T reads91891 11 40 C reads151493 11 40 T reads781855 11 40 C reads657085 11 40 T reads14773 11 40 T reads816042 11 40 T reads92815 12 40 T reads620987 12 40 C reads193052 12 40 T reads775694 12 40 T reads197377 12 40 T reads611614 12 40 C reads269882 12 40 C reads573899 12 40 T reads194659 13 40 T reads681489 13 40 T reads161554 13 40 T reads741486 13 36 T reads71414 13 34 C reads254872 13 38 T reads209609 14 40 C reads280929 14 40 T reads365722 14 40 T reads149238 14 40 C reads94573 14 28 T reads580083 14 40 T reads6713 14 40 C reads626881 14 40 T reads452899 14 40 T reads536304 15 40 C reads837440 15 29 C reads778885 15 40 C reads303785 15 40 T reads247147 15 40 C reads76121 15 31 T reads829163 16 34 C reads522150 16 35 C reads76156 16 40 C reads19003 16 27 T reads120320 16 40 C reads697776 16 40 T reads217514 17 40 C reads187457 17 40 T reads394875 17 40 C reads394077 18 40 T reads610207 18 40 T reads619538 18 40 C reads795734 19 40 T reads2147 19 40 T reads645056 19 40 T reads89577 19 40 T reads43981 19 40 T reads193867 20 40 C reads591321 20 40 T reads844779 20 40 T reads589115 20 40 T reads296993 21 40 C reads770992 21 40 C reads532451 21 40 C reads808478 21 40 T reads18163 21 40 T reads380435 21 40 T reads561578 22 40 T reads372244 22 40 C reads525763 22 40 T reads174348 22 40 T reads54717 22 38 T reads189538 23 29 C reads238379 23 40 C reads299032 23 40 C reads736541 23 28 T reads527332 24 40 T reads19911 25 40 C reads629082 26 40 T reads711580 28 40 T reads645584 33 40 T reads15881 33 26 C reads336164 35 40 C reads30610 1 40 chromsome:ref.fa Polymorphism Sites:2867 NT Read_name Read_site quality score T reads640841 1 40 C reads645666 1 40 C reads320127 1 40 C reads196957 2 40 C reads659930 2 40 C reads74524 2 40 C reads302198 2 40 C reads323608 2 40 C reads144587 2 40 C reads63529 2 40 C reads613053 2 40 C reads487665 2 40 C reads360507 2 40 C reads246934 2 40 C reads204084 3 40 C reads833187 3 40 C reads340783 3 40 C reads438568 3 40 C reads467739 4 40 C reads22405 4 40 C reads480698 4 40 C reads838325 4 40 C reads544835 4 40 C reads53153 4 37 C reads328254 5 40 C reads554570 5 40 C reads192758 5 40 C reads497013 5 40 C reads410885 5 40 C reads787946 5 40 C reads725817 5 40 C reads255293 5 40 C reads522891 6 40 C reads830944 6 40 C reads652448 6 40 C reads576923 6 40 C reads205564 6 40 C reads818171 6 40 C reads289571 6 40 T reads400394 7 40 C reads704085 7 40 C reads692184 7 40 C reads227122 7 40 C reads838135 7 40 C reads364745 7 40 C reads238108 7 40 C reads271204 8 40 C reads7388 8 40 C reads351302 8 40 C reads154912 8 40 C reads436495 8 40 C reads142941 8 40 C reads488512 8 40 C reads506980 9 40 C reads677142 9 40 C reads367055 9 40 C reads571542 9 40 C reads757447 9 40 C reads44031 9 40 C reads815325 9 40 C reads50178 10 40 C reads225487 10 40 C reads322179 10 40 C reads207575 10 40 C reads770782 10 40 C reads716081 10 40 C reads155566 10 40 C reads161910 11 40 C reads463859 11 34 C reads247397 11 40 C reads138025 11 40 C reads122354 11 40 C reads612231 11 40 C reads849171 12 40 C reads301639 12 40 C reads88992 12 36 C reads309703 13 40 C reads473205 13 40 C reads183750 13 40 C reads545019 13 40 C reads560672 13 40 C reads762272 14 40 C reads754847 14 34 C reads666549 14 40 C reads491869 14 40 C reads489369 15 36 C reads639378 15 40 C reads826144 15 40 C reads675982 15 40 C reads214128 15 40 C reads818585 15 40 C reads334360 16 27 C reads332927 16 40 C reads396355 16 36 C reads321616 16 40 C reads502341 16 40 C reads593353 16 33 C reads552726 16 39 C reads67212 17 40 C reads794050 17 40 C reads404561 17 40 C reads595170 17 40 C reads190817 17 40 C reads547866 17 40 C reads794275 17 40 C reads115121 18 29 C reads99606 18 40 C reads287628 18 40 C reads143213 18 40 C reads775865 18 38 C reads467912 19 40 C reads501138 19 40 C reads421027 20 40 C reads774541 20 33 C reads844991 21 40 C reads688615 21 40 C reads732449 22 40 C reads366883 23 40 C reads404194 23 40 C reads624950 23 40 C reads525258 23 40 C reads358650 23 40 C reads134351 24 31 C reads39797 24 40 C reads483941 24 40 C reads591307 25 40 C reads75981 25 40 C reads719184 25 40 C reads356909 25 40 C reads355454 26 40 C reads640835 27 30 C reads48061 29 40 C reads793144 30 37 C reads542350 32 30 C reads631097 32 40 C reads335856 33 29 C reads631701 1 40 C reads130831 1 40 chromsome:ref.fa Polymorphism Sites:2873 NT Read_name Read_site quality score G reads739569 1 40 T reads201465 1 40 T reads576125 1 40 T reads239740 1 40 T reads328932 1 40 G reads523792 2 40 T reads608717 2 40 T reads54924 2 40 T reads726767 2 40 G reads477812 2 40 T reads701129 2 40 T reads124988 2 40 T reads773366 2 40 G reads430369 2 40 T reads321656 2 40 T reads52338 2 40 T reads34584 2 40 T reads135259 3 40 T reads446451 3 40 T reads395061 3 40 G reads333854 3 40 G reads772000 3 40 T reads833904 3 31 T reads818213 3 40 T reads292352 4 40 G reads708306 4 40 T reads29023 4 40 T reads202381 4 40 T reads279459 4 40 T reads77137 4 40 T reads516852 4 40 T reads354142 4 40 T reads604253 4 40 T reads520703 5 40 T reads32337 5 40 T reads661818 5 40 T reads142869 5 40 T reads779297 5 40 T reads200981 5 40 T reads394726 5 40 T reads852394 5 40 G reads158866 5 40 T reads215693 5 40 T reads399309 6 40 T reads1176 6 40 T reads513801 6 40 T reads262360 6 40 T reads68788 6 40 T reads496921 6 38 G reads297102 6 40 T reads502110 6 40 T reads130831 7 40 T reads631701 7 40 T reads640841 7 40 G reads645666 7 40 T reads320127 7 40 T reads196957 8 40 T reads659930 8 40 T reads74524 8 40 G reads302198 8 40 T reads323608 8 40 T reads144587 8 40 G reads63529 8 40 T reads487665 8 40 T reads360507 8 40 T reads246934 8 40 T reads204084 9 40 T reads833187 9 40 T reads340783 9 40 G reads438568 9 40 T reads467739 10 40 T reads22405 10 40 T reads480698 10 40 G reads838325 10 40 T reads544835 10 40 T reads53153 10 31 G reads554570 11 40 T reads192758 11 40 T reads497013 11 40 G reads410885 11 40 T reads787946 11 40 G reads725817 11 40 T reads255293 11 40 T reads522891 12 40 G reads830944 12 40 T reads652448 12 40 G reads205564 12 40 T reads818171 12 40 T reads400394 13 40 T reads704085 13 40 G reads692184 13 39 G reads227122 13 40 T reads364745 13 40 T reads7388 14 40 T reads351302 14 40 T reads154912 14 40 G reads436495 14 40 T reads142941 14 40 G reads488512 14 40 T reads506980 15 25 T reads677142 15 40 T reads367055 15 40 T reads571542 15 40 T reads757447 15 40 T reads44031 15 40 T reads50178 16 40 T reads322179 16 40 T reads207575 16 40 T reads770782 16 40 G reads716081 16 40 T reads515603 17 40 T reads247397 17 40 T reads612231 17 40 T reads849171 18 31 T reads301639 18 40 T reads88992 18 40 T reads309703 19 29 T reads183750 19 40 T reads545019 19 40 T reads560672 19 31 T reads666549 20 40 T reads491869 20 40 T reads489369 21 40 G reads639378 21 28 T reads826144 21 40 T reads675982 21 40 T reads214128 21 40 T reads818585 21 28 T reads334360 22 40 G reads332927 22 40 T reads396355 22 40 G reads321616 22 40 G reads807654 22 40 T reads794050 23 40 T reads404561 23 34 T reads595170 23 40 T reads547866 23 40 T reads638350 24 40 T reads99606 24 40 T reads134219 24 40 T reads7089 25 27 T reads467912 25 40 T reads774541 26 40 T reads844991 27 39 T reads688615 27 31 T reads366883 29 40 T reads624950 29 39 T reads525258 29 40 T reads803725 29 40 T reads591307 31 40 T reads719184 31 40 T reads48061 35 40 T reads195817 1 40 chromsome:ref.fa Polymorphism Sites:2884 NT Read_name Read_site quality score T reads404937 8 40 G reads225363 8 40 G reads116501 8 40 G reads443477 8 40 G reads795238 8 40 G reads580674 8 40 G reads349926 8 40 G reads594301 8 40 G reads446210 9 40 G reads170050 9 40 G reads349507 9 40 G reads667999 9 40 G reads559419 9 40 G reads52405 9 40 G reads289830 9 40 G reads823773 9 40 G reads353481 10 40 G reads695852 10 40 G reads233969 10 40 G reads133807 10 40 G reads28848 10 40 G reads762147 10 40 G reads657478 11 40 G reads834178 11 40 G reads337535 11 40 G reads349575 11 40 G reads725215 11 40 G reads471957 11 40 G reads558059 11 40 G reads705799 11 40 G reads739569 12 40 G reads576125 12 40 T reads239740 12 40 G reads523792 13 40 G reads54924 13 39 G reads726767 13 40 G reads477812 13 40 G reads701129 13 40 G reads430369 13 36 G reads321656 13 40 G reads34584 13 33 G reads135259 14 40 G reads446451 14 40 G reads333854 14 40 G reads772000 14 40 G reads833904 14 30 G reads202381 15 40 G reads279459 15 40 G reads516852 15 40 G reads354142 15 40 G reads520703 16 40 G reads32337 16 40 G reads661818 16 40 G reads142869 16 40 G reads779297 16 40 G reads200981 16 40 T reads852394 16 40 G reads158866 16 40 G reads215693 16 40 G reads399309 17 40 G reads1176 17 40 G reads262360 17 40 G reads68788 17 40 G reads297102 17 40 G reads502110 17 40 G reads119152 17 40 G reads130831 18 40 G reads640841 18 40 G reads645666 18 40 G reads320127 18 40 G reads196957 19 40 G reads659930 19 40 G reads323608 19 39 G reads144587 19 39 G reads63529 19 40 G reads246934 19 40 G reads204084 20 40 G reads833187 20 40 G reads340783 20 40 G reads467739 21 25 G reads22405 21 40 G reads480698 21 40 G reads410885 22 40 G reads787946 22 40 G reads725817 22 40 G reads255293 22 40 G reads522891 23 40 G reads830944 23 33 G reads205564 23 28 G reads818171 23 25 G reads400394 24 40 G reads704085 24 40 G reads227122 24 40 G reads7388 25 40 G reads351302 25 40 G reads506980 26 32 G reads367055 26 40 G reads757447 26 40 G reads815325 26 40 G reads50178 27 40 G reads225487 27 40 G reads322179 27 40 G reads770782 27 40 G reads716081 27 40 G reads247397 28 40 G reads88992 29 30 G reads666549 31 29 G reads826144 32 40 G reads675982 32 40 G reads214128 32 40 T reads67212 34 40 G reads404561 34 33 G reads595170 34 40 G reads190817 34 40 G reads548618 8 40 G reads566490 8 40 G reads58316 7 40 G reads593977 7 40 G reads194514 7 40 G reads72988 7 40 G reads387500 7 40 G reads429866 7 40 G reads306878 7 40 G reads174683 7 40 G reads432340 6 40 G reads797707 6 40 G reads749989 6 40 G reads274103 6 40 G reads316749 6 40 G reads11383 6 40 G reads560798 6 40 G reads625571 5 40 G reads400750 5 40 G reads790426 5 40 G reads558202 5 40 G reads577096 5 40 G reads143262 5 40 G reads406317 5 40 G reads10116 5 40 G reads369083 4 40 G reads457 4 40 G reads723089 4 40 G reads518345 4 40 G reads561735 4 40 G reads547162 4 40 G reads773918 4 40 G reads140516 3 34 G reads19667 3 40 G reads278946 3 40 G reads373215 3 40 G reads703584 3 40 G reads103011 3 40 G reads431058 3 40 G reads656882 3 40 G reads684719 3 40 G reads371859 3 40 G reads6060 2 40 G reads190304 2 40 G reads24015 2 40 G reads387047 2 40 G reads520276 2 40 G reads379026 2 40 G reads773516 2 40 G reads39773 2 40 G reads361620 2 40 G reads784341 1 40 G reads569377 1 40 G reads383785 1 40 G reads85793 1 40 G reads151813 1 40 G reads704056 1 40 G reads137254 1 40 chromsome:ref.fa Polymorphism Sites:2939 NT Read_name Read_site quality score T reads510027 3 40 C reads48721 3 40 C reads661347 3 40 C reads597285 3 40 C reads54422 3 40 C reads738809 3 40 C reads649347 3 40 C reads850026 3 40 C reads549128 4 40 C reads312035 4 40 C reads72218 4 40 C reads119368 4 40 C reads512641 4 40 C reads721143 4 40 C reads35421 4 40 C reads583220 4 40 C reads428789 4 40 C reads637794 4 40 C reads491331 4 40 C reads378035 4 40 C reads643570 4 40 C reads378494 4 40 C reads602318 4 40 C reads730397 5 40 C reads326310 5 40 C reads623509 5 40 C reads687068 5 40 C reads611649 5 40 C reads423488 5 40 C reads283739 5 40 C reads162186 5 40 C reads721796 6 40 C reads301901 6 40 C reads52337 6 40 C reads38242 6 40 C reads569574 6 40 C reads108564 6 40 C reads670771 7 40 C reads604710 7 40 C reads660461 7 40 T reads855431 7 40 C reads133568 7 40 C reads713397 7 40 C reads271687 7 40 C reads557436 7 40 C reads460589 7 40 C reads15105 7 40 C reads534153 7 40 C reads820031 7 40 C reads175235 7 40 C reads693080 7 31 C reads444202 8 40 C reads777079 8 40 C reads720199 8 40 C reads437791 8 25 C reads768868 8 40 C reads696839 8 40 C reads169682 8 40 C reads856149 8 40 T reads330408 9 40 C reads469194 9 40 C reads75268 9 40 C reads780032 9 40 C reads327993 9 40 C reads89811 9 40 C reads285903 9 40 C reads215480 9 40 C reads586159 9 40 C reads241724 9 40 C reads843325 10 40 C reads180934 10 40 C reads724005 10 40 C reads328634 10 40 C reads91444 10 40 C reads342854 10 40 C reads538878 10 40 C reads708504 10 40 C reads575637 10 40 C reads576043 10 40 C reads251880 10 29 C reads181117 10 40 C reads131751 10 40 C reads850733 11 40 C reads498138 11 40 C reads36664 11 40 C reads394243 11 38 C reads257253 11 40 C reads706216 12 39 C reads718332 12 40 C reads197120 12 40 C reads266362 12 40 C reads800673 12 40 C reads357106 12 35 C reads686373 13 35 C reads500460 13 40 C reads279665 13 40 C reads476733 13 40 T reads404226 13 32 C reads26110 13 38 C reads737538 13 40 C reads209935 13 40 C reads781381 14 40 C reads431510 14 40 C reads535027 14 34 C reads440721 14 40 C reads496275 14 40 C reads212435 14 40 C reads675894 15 40 C reads532386 15 40 C reads118735 15 40 C reads782319 15 35 C reads23603 15 40 C reads456695 16 40 C reads165413 16 40 C reads418295 16 40 C reads735918 17 40 C reads542866 17 40 C reads410467 17 40 C reads8555 18 40 C reads567772 18 40 C reads746881 18 40 C reads674001 18 40 C reads608000 19 40 C reads102604 19 40 C reads543207 19 40 C reads476029 20 40 C reads349181 20 27 C reads775420 20 40 C reads448974 20 40 C reads725473 20 40 C reads308232 20 40 C reads575403 21 40 C reads47423 21 36 C reads188174 21 40 C reads153513 21 40 C reads24479 22 40 C reads773634 22 40 C reads219360 22 35 C reads26306 23 40 C reads500598 23 40 C reads609309 24 40 C reads815019 24 40 C reads367680 25 40 C reads162000 25 40 C reads212777 25 35 C reads449926 25 40 C reads150024 28 40 C reads157226 32 32 C reads439563 34 34 C reads71311 3 40 C reads830949 3 40 C reads413994 2 40 C reads691488 2 40 C reads356552 2 40 C reads772957 2 40 C reads808383 2 40 C reads413101 2 40 C reads149852 2 40 C reads671548 2 40 C reads552449 1 40 C reads278554 1 40 C reads207661 1 40 C reads150777 1 40 C reads289514 1 40 C reads716026 1 40 C reads617289 1 40 C reads655086 1 40 C reads268734 1 40 C reads23083 1 40 chromsome:ref.fa Polymorphism Sites:3002 NT Read_name Read_site quality score C reads190509 1 40 G reads431322 2 40 G reads396813 2 40 G reads606209 2 37 G reads479854 2 37 G reads291362 2 40 G reads352358 2 40 G reads166795 2 40 G reads610572 2 40 G reads109188 2 40 G reads697393 2 40 G reads188691 2 40 G reads631073 3 40 G reads124733 3 40 G reads713663 3 40 G reads763353 3 40 G reads470629 3 40 G reads766376 3 40 G reads20438 3 40 C reads656803 3 40 G reads540813 3 40 G reads181661 3 40 G reads547975 3 40 G reads831130 3 40 G reads726723 4 40 G reads482631 4 40 G reads595733 4 40 G reads59549 5 40 G reads701510 5 40 G reads56305 5 40 G reads794632 5 40 G reads484011 5 40 G reads491165 5 40 G reads479356 5 40 G reads173912 5 40 G reads241212 5 40 G reads251772 6 40 G reads48728 6 40 G reads560675 6 40 G reads85283 6 40 G reads516138 6 40 G reads786352 7 40 G reads144173 7 40 G reads665542 7 40 G reads69154 7 40 G reads614951 7 40 G reads533067 7 40 G reads150371 7 40 G reads713498 7 40 G reads543993 8 40 G reads383906 8 40 G reads564214 8 40 G reads639513 8 40 G reads767635 8 40 G reads613718 8 40 C reads798408 8 40 G reads824005 9 40 G reads49330 9 40 G reads732981 9 40 G reads27451 9 36 G reads146730 9 40 G reads308840 9 40 G reads441589 9 40 G reads247727 9 40 G reads445712 9 40 G reads741304 10 40 G reads477468 10 40 G reads856915 10 40 G reads264859 10 40 G reads117974 10 40 G reads63062 10 40 G reads123387 10 39 G reads17920 10 40 G reads730983 10 40 G reads586206 11 40 G reads548799 11 40 G reads283601 11 40 G reads403551 11 40 G reads458795 11 35 G reads374575 11 40 G reads422582 11 40 G reads413035 12 40 G reads130501 12 40 G reads665688 12 40 G reads390318 12 40 G reads131606 12 40 G reads467944 12 40 G reads202922 12 40 G reads707393 12 33 G reads740148 12 40 G reads540616 13 40 G reads31029 13 40 G reads461549 13 40 G reads40464 13 40 G reads121947 13 40 G reads293880 13 40 G reads454128 13 38 G reads395929 13 40 G reads659391 14 40 G reads459633 14 40 G reads628138 14 40 G reads461032 14 40 G reads355158 14 40 G reads169116 14 40 G reads182487 15 40 G reads38586 15 40 G reads506417 15 40 G reads832545 15 40 G reads462286 15 40 G reads317334 15 40 G reads116191 15 40 G reads222232 16 40 G reads24211 16 40 G reads104405 16 40 G reads213787 16 33 G reads201251 16 26 G reads840822 16 40 G reads780243 16 26 G reads298775 16 40 G reads214798 17 27 G reads406265 17 40 G reads92675 17 40 G reads819238 17 40 G reads116666 17 40 G reads521529 17 40 G reads374545 18 40 G reads204051 18 40 G reads557456 18 39 G reads564452 18 40 G reads787919 19 40 G reads719742 19 40 G reads754002 20 40 G reads470438 20 40 G reads77155 20 40 G reads139627 21 40 G reads563289 21 32 G reads515370 22 40 G reads585785 22 40 G reads485153 22 33 C reads428143 23 40 G reads509357 23 40 G reads75430 23 40 G reads224424 24 40 G reads514312 25 40 G reads214959 25 27 G reads322529 25 39 G reads54538 25 40 G reads842482 25 40 G reads83395 26 40 G reads200477 26 40 G reads586029 27 40 G reads338853 27 40 G reads304552 27 40 G reads755610 28 29 G reads445164 28 38 G reads14798 28 40 G reads592635 29 40 G reads620079 29 40 G reads761618 34 40 G reads177237 34 40 G reads148226 35 40 G reads520711 1 40 G reads308489 1 40 G reads29197 1 40 G reads290067 1 40 G reads70892 1 40 G reads717586 1 40 G reads497383 1 40 chromsome:ref.fa Polymorphism Sites:3038 NT Read_name Read_site quality score C reads409386 4 40 G reads369091 4 40 G reads771605 4 40 G reads226315 4 40 G reads743110 5 40 G reads127220 5 40 G reads231455 6 40 G reads403914 6 40 G reads724928 6 40 G reads604397 6 40 G reads126686 6 40 G reads476592 6 40 G reads88886 6 40 G reads612558 6 40 G reads731087 6 40 G reads653958 7 40 G reads631221 7 40 G reads573455 7 40 G reads394115 7 40 G reads716053 7 40 G reads534862 7 40 G reads671046 7 40 G reads811045 8 40 G reads268191 8 40 G reads771687 8 40 C reads851985 8 38 G reads716812 8 40 G reads715889 8 40 G reads492826 8 40 G reads122860 8 40 G reads533227 9 40 G reads43419 9 40 G reads86088 9 40 G reads851987 9 40 G reads185866 9 40 G reads728442 9 40 G reads414962 10 40 G reads763415 10 40 G reads624204 10 40 G reads782485 10 40 G reads531633 10 40 G reads696080 10 40 G reads745564 10 40 G reads685044 10 40 G reads686492 11 40 G reads173924 11 40 G reads658463 11 28 G reads587698 11 40 G reads139725 11 40 G reads408553 11 40 G reads287231 11 34 G reads319432 11 40 G reads739196 11 40 G reads265966 11 33 G reads618060 12 40 G reads185679 12 40 G reads124098 12 40 G reads605070 12 40 G reads574820 12 40 G reads734727 12 40 G reads170055 13 40 G reads333651 13 40 G reads801855 13 40 G reads85364 13 40 G reads511944 13 40 G reads601865 13 40 G reads763694 13 40 G reads165523 13 40 G reads751321 14 37 G reads595241 14 38 G reads99137 14 40 G reads43800 14 40 G reads452793 14 40 G reads834763 15 40 G reads807841 15 40 G reads793432 15 40 G reads798245 15 40 G reads38983 16 40 C reads280791 16 40 G reads109677 16 40 G reads754499 17 40 G reads737642 17 40 G reads418178 18 40 G reads715306 18 40 G reads181486 18 40 G reads668251 18 40 G reads698780 18 40 G reads126280 19 40 G reads745689 19 39 G reads837897 19 40 G reads674241 19 40 G reads57528 19 40 G reads30253 19 40 G reads459194 20 40 G reads175466 20 40 G reads346165 20 40 G reads149511 20 40 G reads271984 20 40 G reads356440 20 40 G reads757725 20 40 G reads349823 21 40 G reads56033 21 40 G reads394428 21 37 C reads132294 21 40 G reads164928 22 32 G reads740064 22 40 G reads840192 23 40 G reads579923 23 40 G reads304144 23 30 G reads126573 24 40 G reads14928 24 40 G reads525893 24 40 G reads837964 24 40 G reads315389 24 40 G reads712985 26 40 G reads236874 26 32 G reads382740 26 40 G reads685005 27 40 G reads496375 28 40 G reads206545 28 40 G reads349611 28 40 G reads853123 29 36 G reads622110 32 38 G reads125676 33 34 C reads117229 33 40 G reads508863 34 40 G reads642682 34 40 G reads99998 34 40 G reads140983 35 40 G reads550084 4 40 G reads93628 3 40 G reads702950 3 40 G reads700913 3 40 G reads743 3 40 G reads93437 2 40 G reads259018 2 40 G reads372785 2 40 G reads254382 2 40 G reads61069 2 40 G reads603358 2 40 G reads215401 2 40 G reads300259 2 40 G reads629611 2 40 G reads305197 1 40 G reads834215 1 40 G reads657808 1 40 G reads529328 1 40 G reads805525 1 40 chromsome:ref.fa Polymorphism Sites:3046 NT Read_name Read_site quality score G reads561994 3 40 A reads266544 4 40 G reads450455 4 40 A reads136815 4 40 A reads194984 4 40 A reads423267 4 40 A reads53184 4 40 G reads649523 4 40 A reads540607 4 40 G reads181425 4 40 A reads650308 4 40 A reads56176 4 40 A reads272310 5 40 A reads451571 5 40 A reads496204 5 40 A reads802141 5 40 A reads583924 5 40 G reads772713 5 40 G reads683683 6 40 A reads8134 6 40 A reads523817 6 29 A reads613438 6 40 A reads738670 6 40 A reads518194 6 40 A reads377784 6 40 A reads694762 6 40 G reads238179 6 40 A reads586986 6 40 A reads3320 6 40 A reads536269 6 40 A reads514752 7 40 A reads373387 7 40 A reads5483 7 40 A reads203312 7 40 A reads715187 7 40 A reads674709 7 40 A reads572573 7 40 A reads384639 7 40 A reads707280 7 40 A reads88852 7 40 A reads544631 7 40 G reads807624 7 40 A reads256550 7 40 A reads461167 8 40 A reads704037 8 40 A reads805525 9 40 A reads529328 9 40 A reads657808 9 40 A reads834215 9 40 A reads305197 9 40 A reads629611 10 40 A reads300259 10 40 A reads215401 10 40 A reads603358 10 40 A reads254382 10 40 A reads372785 10 40 A reads743 11 35 A reads700913 11 40 A reads93628 11 30 A reads409386 12 40 A reads369091 12 40 A reads771605 12 40 A reads226315 12 40 A reads743110 13 40 A reads127220 13 40 A reads231455 14 40 A reads403914 14 28 A reads126686 14 40 A reads476592 14 40 A reads88886 14 40 A reads612558 14 40 A reads573455 15 40 A reads716053 15 40 A reads811045 16 40 A reads268191 16 40 A reads771687 16 40 A reads851985 16 40 A reads716812 16 40 A reads492826 16 37 G reads122860 16 40 G reads533227 17 27 A reads43419 17 40 A reads414962 18 40 A reads624204 18 40 A reads619074 18 40 A reads696080 18 40 A reads685044 18 40 A reads686492 19 40 A reads173924 19 32 A reads658463 19 40 A reads587698 19 40 A reads287231 19 40 A reads739196 19 40 A reads265966 19 40 A reads185679 20 40 A reads124098 20 40 A reads605070 20 34 A reads574820 20 40 A reads170055 21 40 A reads333651 21 40 A reads511944 21 37 A reads601865 21 40 A reads751321 22 40 G reads807841 23 40 A reads280791 24 40 A reads181016 25 40 G reads128323 26 25 A reads698780 26 26 G reads745689 27 40 A reads57528 27 40 A reads127125 28 26 A reads346165 28 40 A reads271984 28 37 A reads757725 28 40 A reads132294 29 28 A reads12543 29 37 A reads579923 31 40 A reads304144 31 28 A reads126573 32 35 A reads14928 32 38 A reads525893 32 40 A reads335121 33 25 A reads712985 34 40 A reads236874 34 40 A reads329338 3 40 A reads686418 3 40 A reads268063 3 40 A reads316399 3 40 A reads220505 3 40 A reads212375 2 40 A reads595713 2 40 A reads772368 2 40 A reads682394 2 40 A reads21917 2 40 A reads147475 2 40 A reads226565 2 40 A reads31887 1 36 A reads755726 1 40 A reads321062 1 40 A reads416790 1 40 A reads675713 1 40 A reads808939 1 40 A reads298152 1 40 A reads88105 1 40 A reads507073 1 40 A reads479049 1 40 chromsome:ref.fa Polymorphism Sites:3052 NT Read_name Read_site quality score A reads379698 3 40 C reads589794 3 40 C reads88415 3 40 C reads428870 4 40 C reads660985 4 40 C reads138908 4 40 C reads515197 4 40 C reads147091 4 40 C reads47255 4 39 C reads81302 5 40 C reads195183 5 40 C reads142496 5 40 C reads581511 5 40 C reads841170 5 40 C reads466409 5 40 C reads122386 5 40 C reads498545 5 40 C reads231153 5 40 C reads137375 5 40 C reads378781 5 40 C reads492798 5 40 C reads127195 5 40 C reads683039 5 40 C reads140520 6 40 A reads151049 6 40 C reads25154 6 40 C reads449652 6 40 C reads231845 6 40 C reads710963 6 40 C reads807508 6 40 C reads461159 6 40 C reads728935 6 40 C reads821067 6 40 C reads479049 7 40 C reads507073 7 40 C reads88105 7 40 C reads298152 7 40 C reads808939 7 40 C reads675713 7 40 C reads416790 7 40 C reads321062 7 40 C reads31887 7 40 C reads147475 8 40 C reads21917 8 40 C reads682394 8 40 C reads772368 8 40 C reads595713 8 40 C reads212375 8 26 C reads220505 9 40 C reads316399 9 40 C reads268063 9 40 C reads686418 9 40 C reads329338 9 40 C reads561994 9 40 C reads423267 10 40 C reads53184 10 40 C reads649523 10 40 C reads540607 10 40 C reads181425 10 40 C reads650308 10 40 C reads56176 10 40 C reads451571 11 26 C reads496204 11 40 C reads802141 11 40 C reads583924 11 40 C reads683683 12 40 C reads8134 12 40 C reads613438 12 40 C reads738670 12 40 C reads377784 12 40 C reads694762 12 40 C reads586986 12 40 C reads3320 12 40 C reads536269 12 40 C reads514752 13 40 C reads203312 13 40 C reads715187 13 40 C reads572573 13 40 A reads384639 13 40 C reads544631 13 40 C reads807624 13 40 C reads256550 13 40 C reads461167 14 40 C reads704037 14 40 C reads805525 15 40 C reads529328 15 40 C reads657808 15 40 C reads834215 15 40 C reads305197 15 40 C reads629611 16 40 C reads300259 16 40 C reads603358 16 40 C reads254382 16 40 C reads372785 16 40 C reads743 17 40 C reads700913 17 40 C reads93628 17 40 C reads369091 18 25 C reads771605 18 40 C reads743110 19 40 C reads231455 20 40 C reads476592 20 33 C reads653958 21 40 C reads631221 21 34 C reads573455 21 40 C reads851985 22 40 C reads716812 22 29 C reads122860 22 40 C reads43419 23 32 C reads624204 24 40 C reads696080 24 40 C reads685044 24 40 C reads265966 25 32 C reads185679 26 25 A reads574820 26 40 C reads170055 27 40 C reads601865 27 40 C reads807841 29 40 C reads280791 30 40 C reads737642 31 40 C reads181016 31 40 C reads128323 32 40 C reads698780 32 35 C reads30253 33 40 C reads346165 34 40 C reads349823 35 27 C reads56033 35 40 C reads348070 3 40 C reads496679 3 40 C reads661725 2 40 C reads18596 2 40 C reads467454 2 40 C reads200069 2 40 C reads160985 1 40 C reads541752 1 40 C reads848990 1 40 C reads13946 1 40 C reads702154 1 40 C reads4209 1 40 chromsome:ref.fa Polymorphism Sites:3086 NT Read_name Read_site quality score C reads453941 3 40 T reads488261 3 40 T reads642246 4 40 T reads725638 4 40 T reads778036 4 40 T reads212382 4 40 T reads527806 4 40 T reads668109 4 40 T reads433506 4 40 T reads345531 5 40 T reads63 5 40 T reads13077 5 40 T reads42637 5 40 C reads401501 5 40 T reads819031 5 40 T reads427357 5 40 T reads703819 5 40 T reads259735 6 40 T reads252980 6 40 T reads715371 6 40 C reads566487 6 40 T reads100368 6 40 T reads512438 6 40 T reads212724 6 40 T reads462142 6 40 T reads165624 7 40 T reads758564 7 40 T reads664495 7 40 T reads458160 7 40 T reads200802 7 40 T reads262359 7 40 T reads196622 7 40 T reads655072 7 40 T reads786632 7 40 T reads756285 7 40 T reads66656 7 40 T reads499249 7 36 T reads471977 7 40 C reads668365 8 40 T reads333480 8 40 T reads234513 8 40 T reads684328 8 40 T reads118970 8 40 T reads569097 8 40 T reads473231 8 40 T reads57598 9 40 T reads356607 9 40 T reads326983 9 40 T reads563294 9 40 T reads106864 9 29 T reads510960 9 40 T reads806848 9 40 T reads796416 10 40 T reads444721 10 40 T reads278449 10 40 T reads467089 10 40 T reads346343 10 40 T reads58166 10 40 C reads822626 11 40 T reads225898 11 40 T reads713930 11 40 T reads304349 11 40 T reads115717 11 40 T reads220043 11 40 T reads109422 11 40 T reads479145 11 40 T reads491376 12 28 T reads225949 12 40 T reads535014 12 40 C reads388043 12 40 T reads553535 12 40 T reads86037 12 40 T reads304703 12 40 T reads384291 13 40 T reads296203 13 40 T reads172870 13 40 T reads184213 13 40 T reads834838 14 40 T reads715801 14 40 T reads590322 14 26 T reads480329 14 40 T reads476130 14 40 T reads135628 14 26 T reads420624 14 40 T reads401302 14 40 T reads827921 15 40 T reads335883 15 40 T reads261936 15 40 T reads730663 15 40 T reads597308 15 40 T reads540170 16 40 C reads386063 16 40 T reads374350 16 40 T reads443092 16 40 T reads430638 17 40 T reads185170 17 40 T reads854497 17 28 T reads754697 17 40 T reads118318 18 40 T reads341348 18 40 T reads633425 18 40 T reads599999 18 32 T reads186382 18 40 T reads328972 18 40 T reads165685 18 40 T reads188494 18 40 T reads567765 18 40 T reads114710 19 39 T reads228805 19 40 T reads414750 19 40 T reads823598 20 40 T reads118006 20 32 T reads633303 20 40 T reads780722 20 40 T reads783450 20 40 T reads225135 21 40 T reads490743 21 40 T reads758813 21 40 T reads464268 21 38 T reads300771 21 40 T reads767229 22 40 T reads250433 22 40 T reads169087 22 40 T reads501990 22 40 T reads815776 23 40 T reads46671 23 40 T reads354558 23 40 T reads233664 23 40 C reads288361 23 40 T reads566644 24 36 T reads768319 24 33 T reads374435 24 30 T reads734560 24 40 T reads744080 25 40 T reads680870 25 40 T reads266410 25 37 T reads560519 26 40 T reads83917 27 40 T reads613434 27 32 C reads468394 28 40 T reads828233 28 40 T reads342357 28 30 C reads131871 29 26 T reads557559 30 35 T reads344678 30 40 C reads557748 33 40 T reads617070 33 36 T reads814839 34 40 T reads197571 3 40 T reads459902 3 40 T reads55805 3 40 T reads637782 3 40 T reads169283 3 40 T reads673535 3 40 T reads10106 3 40 T reads762148 3 40 T reads56668 3 40 T reads847429 3 40 T reads10936 3 40 T reads137153 3 40 T reads461408 2 40 T reads460123 2 40 T reads809236 2 40 T reads192807 2 40 T reads782121 1 40 T reads192085 1 40 T reads66678 1 40 T reads206596 1 40 T reads712443 1 40 T reads845162 1 40 T reads554949 1 40 T reads269321 1 40 T reads641361 1 40 T reads639145 1 40 chromsome:ref.fa Polymorphism Sites:3110 NT Read_name Read_site quality score G reads826073 1 40 G reads616858 1 40 G reads457364 1 40 G reads35822 2 40 G reads15377 2 40 C reads122180 2 40 C reads700117 2 40 G reads533297 2 40 G reads854390 2 40 G reads246147 3 40 C reads403194 3 39 G reads814979 3 40 G reads446460 3 40 C reads602905 3 40 C reads106949 3 40 C reads144709 4 40 G reads488665 4 40 C reads215935 4 40 G reads594005 4 40 G reads53669 4 40 C reads351708 4 40 G reads482919 5 40 C reads113817 5 40 G reads271326 6 40 C reads69583 6 40 C reads661206 6 40 C reads274594 6 40 G reads200627 6 40 C reads333164 7 40 G reads778672 7 40 C reads8959 7 40 G reads207058 7 40 G reads582924 7 40 G reads815815 7 40 G reads694003 7 40 C reads498613 7 40 C reads98280 7 40 G reads648167 8 40 G reads666013 8 40 C reads707750 8 40 G reads608998 8 40 G reads452198 8 40 C reads8121 8 40 C reads697086 8 40 G reads224901 8 40 C reads319609 8 40 C reads729620 9 40 C reads462686 9 40 C reads382292 9 40 C reads228666 9 40 C reads376286 9 40 C reads737480 9 40 G reads582025 9 40 C reads704490 10 40 G reads447459 10 40 C reads506024 10 40 C reads807924 10 40 G reads728886 10 40 G reads320646 11 40 G reads465003 11 40 C reads90935 11 40 C reads789153 11 40 C reads265987 11 40 G reads332801 11 40 G reads604893 11 40 G reads435112 12 40 G reads346059 12 38 G reads628357 12 40 G reads174704 12 40 C reads25473 12 34 G reads336423 12 40 G reads312947 12 40 G reads690576 13 40 C reads673607 13 40 G reads626816 13 40 G reads312100 13 40 C reads782563 14 40 G reads540325 14 40 G reads275649 14 38 G reads85874 14 40 G reads5390 14 40 G reads498209 15 40 G reads214999 16 40 C reads11521 16 40 C reads284013 16 40 C reads312736 16 31 G reads312301 16 40 G reads638106 16 40 G reads319041 17 40 G reads479461 17 40 C reads610452 17 40 G reads667901 17 30 G reads401625 18 40 C reads63358 18 40 G reads530349 18 40 C reads578295 18 40 G reads714440 18 40 G reads848711 18 40 G reads518671 18 40 G reads133124 18 40 C reads329012 20 40 G reads591322 20 40 C reads600043 20 40 G reads747291 21 40 G reads684985 21 40 G reads249090 21 40 G reads232571 21 40 C reads724336 22 26 C reads29206 22 40 G reads18071 22 30 G reads797730 22 37 G reads41866 23 40 G reads379314 23 40 G reads697560 23 40 G reads219750 23 38 C reads69501 24 40 G reads563259 24 40 G reads724230 24 37 C reads639145 25 40 C reads712443 25 40 G reads66678 25 40 C reads809236 26 40 G reads10106 27 40 C reads197571 27 31 G reads453941 27 40 G reads63 29 40 G reads684328 32 40 C reads118970 32 40 G reads510960 33 37 G reads806848 33 40 C reads443937 1 40 C reads587429 1 40 C reads332297 1 40 chromsome:ref.fa Polymorphism Sites:3126 NT Read_name Read_site quality score C reads681827 2 40 A reads602488 2 40 A reads534795 3 40 A reads339054 3 40 A reads588700 3 40 A reads148579 3 40 A reads50475 3 40 A reads683485 3 40 A reads252921 3 40 A reads46632 4 40 A reads735832 4 40 A reads392966 4 40 A reads763547 4 40 A reads833506 4 40 A reads321306 4 40 C reads374659 4 40 A reads592658 4 40 C reads384600 4 40 A reads639430 5 40 A reads237707 5 40 A reads220810 5 40 A reads470734 5 40 A reads88826 5 40 A reads433982 5 40 A reads535433 5 40 A reads826363 6 40 A reads235003 6 40 A reads205594 6 40 A reads185861 6 40 A reads586655 6 40 A reads677359 6 40 A reads786585 6 40 A reads338703 6 40 A reads739824 7 40 A reads552155 7 40 A reads218740 7 40 A reads411279 7 40 A reads773377 7 39 A reads135321 7 40 A reads222529 8 40 A reads337171 8 40 A reads828707 8 40 A reads389560 8 40 A reads134497 8 40 A reads390454 9 40 A reads775271 9 40 A reads612077 9 40 A reads235647 9 40 A reads280449 9 40 A reads243771 9 40 A reads444552 9 40 C reads685887 10 40 A reads607984 10 40 A reads214994 10 40 A reads244712 10 40 C reads437298 10 40 C reads149716 10 40 C reads813706 10 40 A reads612935 10 40 A reads289800 11 26 A reads633667 11 40 A reads826941 11 40 A reads349678 11 40 A reads19954 11 40 A reads625330 12 40 A reads62585 12 40 A reads569142 13 40 A reads298128 13 40 A reads713685 13 40 A reads286022 13 40 A reads328260 14 40 A reads490059 14 40 A reads579797 14 40 A reads467533 15 40 A reads854428 15 40 A reads227309 15 40 A reads268292 15 40 A reads386212 15 40 A reads661182 16 40 A reads345875 16 40 A reads540733 16 40 A reads463475 16 40 A reads616493 16 40 A reads618789 16 40 A reads332297 17 40 A reads443937 17 40 A reads826073 17 40 A reads616858 17 40 A reads15377 18 40 A reads122180 18 40 A reads700117 18 40 A reads446460 19 40 A reads106949 19 40 A reads594005 20 40 A reads53669 20 25 A reads351708 20 40 A reads661206 22 40 A reads200627 22 40 A reads778672 23 40 A reads582924 23 40 A reads319609 24 27 A reads729620 25 40 A reads382292 25 40 A reads228666 25 32 A reads582025 25 40 A reads447459 26 27 A reads728886 26 40 A reads789153 27 40 A reads265987 27 40 A reads604893 27 28 A reads174704 28 40 A reads25473 28 40 A reads312947 28 40 A reads690576 29 40 A reads138554 29 40 A reads5390 30 40 A reads214999 32 40 A reads11521 32 40 A reads667901 33 30 A reads530349 34 40 A reads848711 34 33 A reads51124 2 40 A reads597593 2 40 A reads39824 2 40 A reads278404 1 40 A reads9928 1 40 A reads49849 1 40 A reads89945 1 40 chromsome:ref.fa Polymorphism Sites:3136 NT Read_name Read_site quality score C reads828476 3 40 G reads242560 3 40 G reads807184 3 40 G reads765502 3 40 G reads99187 4 40 G reads282224 4 40 G reads367548 4 40 G reads656318 4 40 G reads294710 4 40 G reads683435 4 40 C reads68894 4 40 G reads132762 4 40 G reads784884 4 40 G reads632460 5 40 G reads291916 5 40 G reads34301 5 40 C reads497874 5 40 G reads554998 5 40 G reads303940 5 40 G reads655540 5 40 G reads555045 5 40 G reads376179 5 40 G reads5547 5 40 G reads293335 6 40 G reads18085 6 40 G reads344830 6 40 G reads111507 6 40 G reads10026 6 40 G reads701719 7 40 G reads567316 7 40 C reads322028 7 40 G reads470685 7 40 G reads58946 7 40 G reads830241 7 40 G reads220410 7 40 G reads733579 7 40 G reads230721 7 40 G reads399395 7 40 G reads688121 7 40 G reads28644 7 40 C reads602977 7 40 G reads284653 8 40 G reads506848 8 40 G reads113044 9 40 G reads393854 9 40 G reads232035 9 40 G reads108120 10 40 G reads246022 10 40 G reads485770 10 40 G reads233855 10 40 G reads67946 10 40 G reads221297 10 40 G reads820203 10 28 G reads89945 11 40 G reads49849 11 40 G reads9928 11 40 G reads278404 11 40 G reads51124 12 40 G reads338911 12 40 C reads681827 12 40 G reads602488 12 40 G reads534795 13 40 G reads588700 13 40 G reads683485 13 27 G reads252921 13 40 G reads46632 14 40 G reads735832 14 40 G reads763547 14 40 G reads833506 14 40 G reads321306 14 25 C reads374659 14 30 C reads384600 14 40 G reads639430 15 40 G reads237707 15 40 G reads220810 15 40 G reads88826 15 40 G reads535433 15 40 G reads205594 16 40 G reads185861 16 30 G reads586655 16 40 G reads739824 17 33 G reads411279 17 40 G reads337171 18 40 G reads828707 18 40 G reads390454 19 40 G reads612077 19 40 G reads235647 19 38 G reads243771 19 40 G reads444552 19 40 G reads607984 20 40 G reads214994 20 40 G reads826941 21 40 G reads356398 21 40 G reads19954 21 33 G reads236878 22 40 G reads490059 24 27 G reads579797 24 40 G reads854428 25 40 G reads386212 25 40 G reads345875 26 40 G reads616493 26 28 G reads587429 27 40 G reads533297 28 40 G reads602905 29 40 G reads661206 32 40 G reads200627 32 40 G reads737480 35 29 G reads582025 35 34 G reads502624 3 40 G reads25022 3 40 G reads171008 3 40 G reads221684 3 40 G reads428295 2 40 G reads187905 2 40 G reads29001 2 40 G reads751266 2 40 G reads575747 2 40 G reads160115 1 40 G reads544415 1 40 G reads263324 1 40 G reads357766 1 40 G reads820057 1 40 G reads683908 1 40 G reads423817 1 40 G reads366917 1 40 chromsome:ref.fa Polymorphism Sites:3182 NT Read_name Read_site quality score G reads814843 7 40 A reads530738 7 40 A reads303204 7 40 A reads825606 7 40 A reads555102 7 40 A reads301571 7 40 A reads255000 8 40 A reads471272 8 40 A reads760499 8 40 A reads349976 8 40 A reads523785 8 40 A reads323865 8 40 A reads421620 8 40 A reads749865 8 40 A reads451488 8 40 A reads468155 8 40 A reads607566 8 40 A reads291931 8 40 A reads849594 9 40 A reads214106 9 40 A reads460004 9 40 A reads191649 9 40 A reads48758 10 40 A reads750039 10 40 A reads220443 10 25 A reads283231 10 40 A reads13043 10 40 A reads123862 11 40 A reads657118 11 40 A reads178428 11 40 A reads419658 12 40 A reads766072 12 40 A reads665680 12 40 A reads778866 12 40 A reads336445 13 40 A reads533273 13 30 A reads454922 13 40 A reads194708 14 40 A reads510210 14 34 A reads122729 14 40 A reads612952 14 40 A reads790742 14 40 A reads310180 14 40 A reads251088 14 40 A reads53738 14 40 A reads704781 14 38 A reads625705 15 40 A reads262233 15 40 A reads254195 16 40 A reads744535 16 30 A reads39578 16 40 A reads483930 16 33 A reads138491 16 40 A reads314799 16 40 A reads289762 17 40 A reads245843 17 36 A reads537788 17 40 A reads295833 17 40 A reads317475 17 40 A reads474724 17 40 A reads854896 18 40 A reads475041 18 40 A reads710725 18 40 A reads369185 18 40 A reads636936 18 40 G reads314493 19 40 A reads564779 19 40 A reads303876 19 40 A reads279496 19 40 A reads851958 19 28 A reads628744 20 40 A reads157623 20 40 A reads234562 20 38 A reads792553 20 40 A reads251872 21 31 A reads120422 21 40 A reads514155 21 40 A reads497083 22 40 A reads758695 23 40 A reads777566 24 27 A reads53971 24 40 A reads49747 25 40 A reads507038 25 40 A reads459 26 40 A reads15247 27 27 A reads690892 27 40 A reads548168 27 40 A reads421291 28 40 A reads543860 28 40 A reads39902 28 40 A reads691527 29 33 A reads685028 29 40 A reads99442 32 40 G reads118922 32 30 A reads484543 32 31 A reads70856 32 40 A reads579025 32 40 A reads631201 32 31 A reads283363 33 40 A reads115484 7 40 A reads849641 7 40 A reads80800 7 40 A reads825886 6 40 A reads578671 6 40 A reads403293 6 40 A reads458970 6 40 A reads499807 6 40 A reads617536 5 40 A reads66897 5 40 A reads43850 5 40 A reads396655 5 40 A reads591916 5 40 A reads747426 4 40 A reads714023 4 40 A reads121548 4 40 A reads330280 4 40 A reads9343 3 40 A reads580539 3 40 A reads619537 3 40 A reads359239 3 40 A reads796800 2 40 A reads791793 2 40 A reads200101 2 40 A reads641271 2 40 A reads426960 2 40 A reads794074 2 40 A reads60293 2 40 A reads231524 1 40 A reads50890 1 40 A reads651686 1 40 A reads670452 1 40 chromsome:ref.fa Polymorphism Sites:3193 NT Read_name Read_site quality score A reads612699 2 40 T reads550295 3 40 A reads624581 3 40 A reads14027 3 40 A reads398907 3 40 A reads596834 3 40 A reads484782 3 40 A reads793214 3 40 A reads572300 3 40 T reads695806 4 40 A reads659843 4 40 A reads727004 4 40 A reads538355 4 40 A reads720569 4 40 A reads280961 4 40 A reads630824 4 40 A reads547355 5 40 A reads54180 5 40 A reads627387 5 40 A reads409048 5 40 A reads787461 5 40 A reads299459 5 40 A reads516333 5 40 A reads3613 5 40 A reads218253 5 40 A reads597917 5 40 A reads202456 5 40 A reads752472 5 40 A reads172654 5 40 A reads368575 6 40 A reads50301 6 40 A reads133200 6 40 A reads396056 6 40 A reads645511 6 40 A reads809258 6 40 A reads405355 6 40 A reads347020 6 40 A reads623985 7 40 A reads201135 7 40 A reads98807 7 40 A reads205704 7 40 A reads270146 8 40 A reads130031 8 32 T reads206327 8 40 A reads282103 8 40 A reads128899 8 40 A reads797375 8 40 A reads209058 9 40 A reads489129 9 40 A reads457735 9 40 A reads289691 9 40 A reads393820 9 40 A reads38496 9 40 A reads164677 10 40 A reads781239 10 40 T reads435574 10 40 A reads481852 10 40 A reads794232 10 40 A reads194344 10 40 A reads856411 10 40 A reads82602 10 40 A reads424518 10 40 A reads830512 10 40 A reads409252 10 40 A reads548831 10 40 A reads289852 10 40 A reads817836 10 40 A reads509207 11 40 A reads543390 11 40 A reads378786 11 40 A reads598167 11 40 A reads742660 11 40 T reads29952 11 40 A reads504978 11 26 A reads572461 11 40 A reads448400 11 40 A reads651686 12 40 T reads50890 12 40 A reads60293 13 40 A reads794074 13 40 A reads426960 13 40 A reads641271 13 35 A reads200101 13 40 A reads791793 13 40 A reads796800 13 25 T reads359239 14 37 T reads619537 14 40 A reads121548 15 40 A reads591916 16 40 A reads43850 16 40 A reads66897 16 40 A reads617536 16 40 A reads499807 17 40 A reads403293 17 37 A reads80800 18 26 A reads849641 18 40 A reads115484 18 40 A reads814843 18 29 A reads530738 18 40 A reads303204 18 40 A reads825606 18 33 A reads555102 18 40 A reads760499 19 40 A reads523785 19 39 A reads421620 19 31 A reads197285 19 31 A reads749865 19 40 A reads451488 19 40 T reads291931 19 40 A reads460004 20 40 A reads283231 21 40 A reads13043 21 40 A reads657118 22 36 A reads665680 23 25 A reads778866 23 40 A reads229640 23 40 A reads336445 24 40 A reads169316 24 40 A reads533273 24 40 A reads612952 25 40 A reads790742 25 40 A reads53738 25 40 A reads262233 26 32 A reads254195 27 40 T reads138491 27 40 A reads245843 28 31 A reads594580 28 32 A reads710725 29 40 A reads314493 30 40 A reads628744 31 25 A reads157623 31 40 A reads120422 32 40 A reads103718 33 40 T reads290 34 40 A reads758695 34 40 A reads427725 34 28 T reads53971 35 27 A reads252301 2 40 A reads220367 2 40 A reads753425 2 40 A reads448085 1 40 A reads305991 1 40 A reads432788 1 40 A reads634680 1 40 A reads206963 1 40 A reads480433 1 40 A reads799838 1 40 A reads351088 1 40 A reads267020 1 40 A reads811066 1 40 chromsome:ref.fa Polymorphism Sites:3315 NT Read_name Read_site quality score T reads444351 4 40 C reads856494 4 40 T reads664411 4 40 C reads272914 4 40 C reads120812 4 40 T reads320746 5 40 C reads651877 5 40 T reads788870 5 40 C reads762001 5 40 C reads802470 5 40 C reads525698 5 40 T reads69389 5 40 T reads714019 6 40 T reads848830 6 40 C reads456410 6 40 T reads444140 6 40 C reads539129 6 40 C reads719433 6 40 C reads724555 6 40 C reads391023 6 30 C reads650036 6 40 T reads765192 6 40 C reads650842 7 40 T reads155398 7 40 T reads195821 7 40 T reads207880 7 40 C reads679010 7 40 C reads676220 7 40 C reads219880 7 40 T reads150167 7 40 C reads78100 7 40 C reads536258 7 40 C reads557459 8 40 C reads240365 8 40 T reads354953 8 40 T reads397816 8 40 T reads378344 8 40 C reads678837 8 40 T reads734100 9 40 T reads464536 9 40 C reads640197 9 40 C reads690696 9 40 T reads256515 10 40 C reads827126 10 40 C reads495536 10 40 C reads292712 11 40 T reads693586 11 35 C reads291067 11 40 C reads757820 12 40 T reads456080 12 40 T reads104442 12 40 C reads200582 13 40 C reads222435 13 40 C reads187327 13 40 T reads754272 13 40 C reads834141 14 40 C reads403980 14 37 C reads601718 14 40 C reads534020 14 40 C reads824692 15 40 C reads587296 15 40 C reads405129 15 30 C reads501701 15 40 C reads278366 16 40 C reads688237 16 40 C reads541148 16 33 C reads772715 16 40 T reads341015 16 40 C reads548932 17 40 C reads531644 17 40 C reads650198 17 40 C reads308471 17 40 C reads25457 18 40 C reads731779 18 34 C reads754855 18 40 T reads301427 18 40 C reads693859 19 40 C reads38767 20 40 T reads247423 20 40 C reads344515 20 26 T reads724360 21 40 C reads219191 21 40 C reads828087 21 40 C reads283128 21 40 T reads8274 21 28 C reads431000 22 40 C reads292245 2