Publications
2009:
Hua Bao,Yuanyan Xiong, Hui Guo, Renchao Zhou, Xuemei Lu, Zhen Yang, Yang Zhong, Suhua Shi. MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads.
BMC Genomics, 10(Suppl 3):S13
Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi. MapView: visualization of short reads alignment on a desktop computer.
Bioinformatics 2009 25(12): 1554-1555
2008:
Zhou£¬R., X. Gong, D. Boufford, C-I Wu, S. Shi,2008,Testing hypothesis of unidirectional hybridization in plants: observations on Sonneratia, Bruguiera and Ligularia¡±. BMC Evolutionary Biology 8:149
Liang S., R. Zhou, S. Dong, S. Shi, 2008.Adaptation to salinity in mangroves: Implication on the evolution of salt-tolerance. Chinese Science Bulletin 11: 1708-1715
Suo Qiu, Renchao Zhou, Suhua Shi, et al. 2008 Molecular evidence for natural hybridization between Sonneratia alba and S. griffithii. Journal of Systematics and Evolution
2007:
Tian Tang, et al. 2007. Genomic Variation in Rice Genesis of Highly Polymorphic Linkage Blocks during Domestication. PLOS Genetics.
Zhou, R., K. Zeng, W. Wu, X. Chen, Z. Yang, S. Shi. C-I. Wu. 2007,Population Genetics of Speciation in Nonmodel Organisms: I. Mangroves. Molecular Biology and Evolution 24: 2746-2754
Kai Zeng, et al. 2007. Comparisons of Site- and Haplotype-Frequency Methods for Detecting Positive Selection. Mol Biol Evol.
Zeng K, Shi S, Wu CI. 2007. Compound tests for the detection of hitchhiking under positive selection. Molecular Biology and Evolution 24: 1898-1908
Tian Tang, Suhua Shi, et al. 2007. Molecular Population Genetics of Rice Domestication. Journal of Integrative Plant Biology.
2006:
Kai Zeng, Yunxin Fu et al. 2006. Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants. Genetics.
Tian Tang, Jian Lu, et al. 2006. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. TRENDS in Genetics.
Xiaowei Ni, Yelin Huang, et al. 2006. Genetic diversity of the endangered Chinese endemic herb Primulina tabacum (Gesneriaceae) revealed by amplified fragment length polymorphism (AFLP) Genetica.
2005:
Renchao Zhou, et al. 2005. Molecular criteria for determining new hybrid species An application to the Sonneratia hybrids. Molecular Phylogenetics and Evolution.
Xinhui Fu, Yelin Huang, et al. 2005. Construction of a SSH library of Aegiceras corniculatum under salt stress and expression analysis of four transcripts. Plant Science.
2004:
Wu, C.-I., S. Shi, Y. Zhang. A case for conservation. 2004. Nature 428: 213-214
Suhua Shi, et al. 2004. Molecular phylogenetic analysis of mangroves: independent evolutionary origins of vivipary and salt secretion. Molecular Phylogenetics and Evolution
Tang,T., J.Huang, Y. Zhong, S. Shi,2004. High-throughput S-SAP by fluorescent multiplex PCR and capillary electrophoresis in plants. Journal of Biotechnology 114: 59-68
Wang, Y.£¬ P. W. Fritsch, S. Shi, F. Almeda, and B. C. Cruz, 2004. Molecular phylogeny and infrageneric classification of Symplocos (Symplocaceae) inferred from DNA sequence data. American Journal of Botany 91:1900-1913
